Author Archives: Georgia Ray

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About Georgia Ray

Research and writing on effective altruism, risk, humans, animals, and microbes. Blog @ eukaryotewritesblog.com. I also write at globalriskresearch.org.

Why people like your quick bullshit takes better than your high-effort posts

Right now I’m coaching for Inkhaven, a month-long marathon writing event where our brave residents are writing a blog post every single day for the entire month of November.

And I’m pleased that some of them have seen success – relevant figures seeing the posts, shares on Hacker News and Twitter and LessWrong. The amount of writing is nuts, so people are trying out different styles and topics – some posts are effort-rich, some are quick takes or stories or lists.

Some people have come up to me – one of their pieces has gotten some decent reception, but the feeling is mixed, because it’s not the piece they hoped would go big. Their thick research-driven considered takes or discussions of values or whatever, the ones they’d been meaning to write for years, apparently go mostly unread, whereas their random-thought “oh shit I need to get a post out by midnight or else the Inkhaven coaches will burn me at the stake”1 posts get to the front page of Hacker News, where probably Elon Musk and God read them.

It happens to me too – some of my own pieces that took me the most effort, or that I’m proudest of, have zero notable comments or responses. I’m not upset about it. I’ve been around the block. It happens.

But for those people, those new bloggers who are kind of upset about the internet’s bad taste, might benefit from reading artist Dimespin’s essay written to other visual artists: “Why people like your doodles better than your finished works.”

e.g.:

Screenshot from Dimespin's essay. A heading reads: The doodle is easy to read, the polished work is busy. A pair of doodled bunny drawings demonstrate this. The author explains: "The polished work is completely drenched in little details that the artist slaved over, but the details create a kind of overall noise that makes everything harder to understand, making the whole image less appealing."
Excerpt from dimespin’s essay. There’s more, it’s a great piece, go read it.

This piece is good and even if you’re not a visual artist, you can probably make your own analogies by reading it. That said, to spell out a few for the writerly crowd:

The quick post is short, the effortpost is long

Here is the most important thing I can tell you for writing things that people might choose to read on purpose: Make it short. Everyone has 10,000,000 other things they could be reading. Make it efficient. Make it count.

If you are Scott Alexander, you can get huge readership on your long articles. If you aren’t, try either writing short things or becoming Scott Alexander. Pro tip: One of these things is easier than the other.

The quick post is about something interesting, the topic of the effortpost bores most people

The random historical event you read half a sentence about on Wikipedia and it caught your eye? Maybe that means that it could catch a lot of people’s eyes, and your quick post has brought it to them. If you’ve spend ten years formulating a theory about your field of work, that might only be interesting to people who care about that field. Or it’s about one of those “what is good anyhow” or “my theory of consciousness” type questions that people either already know about or already know they don’t give a shit about. Everyone has their own theory of consciousness, Harold!

The quick post has a fun controversial take, the effortpost is boringly evenhanded or laden with nuance

Screenshot of the header of a research  paper by Kieran Healy, 2017, titled "Fuck Nuance".

The quick post is low-context, the effortpost is high-context

The quick posts that aren’t even about a thing you’re an expert in – well, okay, you don’t know a lot, but you’ve written it as a non-expert and it’s at a non-expert’s level of understanding. Most readers aren’t experts in whatever random thing. You are automatically going on this journey of discovery with them.

Meanwhile, it’s really hard to explain something you have a detailed technical understanding of, in a way that’s approachable to others. You haven’t spoken to someone who ISN’T a software engineer in eight months. You’re tripping over feldspars left and right. Even if you try to explain it to a novice, you might not do it very well. “To appreciate why this modern factory design choice is interesting, we have to understand the history of automobile manufacturing logistics. In 1886 – ” Okay, maybe you’re right, but I’m also already closing the tab.

The quick post is has a casual style, the effortpost is inscrutably formal

Excessive linguistic density frequently triggers a distinct reticence in opportunistic audiences to apply interpretive labor to the text in question.

AKA: oh my god, just talk like a normal person, nobody wants to read all that.

You might put formal language into a piece because you are an expert and you’re thinking about it in jargon and conceptual terms. In this case, try saying it like you’d explain it to your buddy who doesn’t know jack shit about it.

You might also use formal language in an attempt to Make It Look Professional – unless you’re aiming for a really particular audience that eats up formality, just stop doing that! Readability is kind.

Excerpt from Leonardo Da Vinci's "Virgin of the Rocks" - a colorful and dark and busy painting - vs his "Vitruvian Man" sketch.
Look at da Vinci’s works: These ladies with these muscular babies are nice or whatever, but we all know and love the dramatic four-armed man in the circle.

If you’re a writer and you’ve run into this situation and you’re upset about the internet’s bad taste and lack of discernment, my main advice is that on some level, you gotta get over it. You will never have any control over what random people find interesting, or what the algorithms decide to promote, or anything at all about other people. You’re lucky to be getting an audience at all, and if you are, you’re doing at least something right.

If you’re smart, you can convert these flickers of fame into more readership for your other better stuff – but the attention of the internet is best modeled as a random swarm of locusts that will occasionally land on your ripe fields based on its inscrutable whims. You can go crazy analyzing it or you can just keep farming.


Maybe you should just do the opposite of all these things so your writing becomes popular? Well, I don’t know. Maybe, maybe not.

If you care about maximizing readership, I dunno, sure. Clickbait is popular for a reason – it works. If you don’t lie to the readers or advocate for anything evil, then I don’t think you’re doing anything wrong by optimizing for readership.

Note that some topics have inherently wider appeal than others – a short light post discussing something concrete and weird about the world is definitely going to get more readers than a piece that compares different philosophical schools. But if you care about philosophy, maybe the second piece is more important to you to write. The numbers aren’t a proxy for value of the piece or quality of its ideas.

Even if you’re exclusively interested in maximizing reception, audience might matter. I think very few people cared about my 2017 summary of a 2015 Blue Ribbon Study Panel on Biosecurity report, which is fair – I wrote it because I had already read this 83-page-long report, and figured someone else might just like to see my notes. And empirically they did, because a major biosecurity funder came up to me at an event and said they read it and really appreciated that I wrote it – they wanted to know what was in the original report and didn’t want to read 83 pages. This was a fantastic audience for it to reach. Or, like, if you want to contribute to the academic discourse, probably you want to engage with the academic literature, and that’s just inherently gonna dissuade many casual readers.

But listen, I bet you’re not just writing to maximize audience. Friend of the blog Ozy Brennan once said that being a writer requires “the absolute conviction that total strangers should listen to you because your words are interesting and valuable” (as well as “the decision to choose a career where you never leave the house or talk to anyone”.)

You’re here to say something interesting and valuable, right? I don’t think you ought to smooth out everything you touch for the masses. You want to say something that only you could say or that will hit the reader who needs it at the right time. You want to impress that one guy at the Blogging Club, or you practice “blogging as warnings scrawled on the cave wall”, or you’re writing for nice future AGIs creating rescue simulations of you based on your digital text corpus. Listen. Don’t lose your mind about it. Just try to say something beautiful and true. Or, failing that, say something fascinating and baffling.

But, I mean, obviously it’d be nice if the masses turn out to want to hear it too. I get it. There’s nuance.

This post is mirrored to Eukaryote Writes Blog, Substack, and Lesswrong.

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  1. Nobody has dropped out yet! Isn’t that amazing? ↩︎

The rare, deadly virus lurking in the Southwest US, and the bigger picture

If you live in this one tiny county in California, you might be more likely to die from Sin Nombre Virus than in a car crash.

In the same way that “why does the frozen spinach I want to buy cost much more than it used to?” engages with a vast interconnected web of economies and monetary policies and farmers and supply chains, asking “what’s up with this rare disease people sometimes get in my part of the world?” is actually a question about the entire ecosystem, plus how organisms even work.

The reason you have to think about the natural world when you do biosecurity is that the vast majority of human diseases come from animals.  What we think of as diseases to humans is a two-dimensional slice of a giant, rotating, obscure shape of many dimensions – a whole world of diseases, little communities of microbes and macrobes interacting and evolving and getting sick and occasionally passing their diseases around between them. Communities of parasites built on communities of hosts, all colliding constantly. This is the large scale of biosecurity. Nothing in infectious disease research makes sense without it. Any question about human health or symptomology or individual risk or what have you is a tiny speck on the shore of this ocean.

Occasionally, one of those parasites reaches out of the host community it’s adapted to, and finds a foothold in another host. And so the sphere gets a little bigger, a little more interconnected.

Today we’ll be looking at a single slice of the grand pageant, about this size – one virus in one part of the world, that sometimes slips from its home and finds its way into a human animal.

Sin Nombre Virus

Sin Nombre Virus was first characterized in 1993 in New Mexico. Since then, there haven’t been many identified infections, but every now and then, cases crop up. Even in the medically well-equipped United States, Sin Nombre virus has maintained an astonishing 40% mortality rate.

Here’s a map of hantavirus infections in the US by state, since its discovery. We can see that it’s far-reaching, but it clearly has a geographic localization.

CDC map of U.S. cumulative cases of hantavirus by state between 1993 and 2022. We can see that the east half has very little hantavirus (under 10 cases) and that every state in the west half has more more than or close to 20. The highest numbers are in New Mexico with 122 cases, Colorado with 119 cases, Arizona with 86, and California with 78.

So if you live in California, your risk is even comparatively low. But out of curiosity, let’s look closer at a map of SNV infections in California counties.

Map of hantavirus cases reported in California, by county. Eastern states have more cases, with the highest number of cases being in one county in the far center-east of the state.
Map from the California Department of Public Health, 1980-2024.

Huh, what’s the deal with that one county? Note that this is a total case map, not a per capita case map, and that county doesn’t have any large cities. In fact, it’s the 4th least populated out of California’s 58 counties. So the risk is even higher than that map makes it look!

But it’s pretty unlikely that any given blogger would live in that county, isn’t it?

Ha ha, what a funny idea. Anyway, I happened to take an interest in this rare, hyperdeadly disease.

The virus without a name

Most current reporting describes the disease we’re looking at today with the more general name of hantavirus – which it is, but there are multiple human diseases in the hantavirus family.

They’re split into the Old World and New World hantavirus. The Old World hantaviruses cause hantavirus hemorrhagic fever with renal syndrome (HFRS) in Eurasia.

The New World hantaviruses include our subject of interest today as well as the related Andes virus in South America (plus a few other, even rarer North American viruses we’ll discuss later). Andes virus has similar symptoms and is about as deadly as Sin Nombre Virus, but it sees more cases every year – 100-200 versus North America’s “dozens” – and it shows occasional person-to-person spread. We’ll come back to that, but for now, I’m focusing on the most common North American hantavirus because it’s the one that’s in my own backyard. …Potentially literally.

The North American hantavirus we’re discussing today is more specifically known as Sin Nombre virus. Why is it called that?

It was discovered in 1994 after a lot of people got sick in the Four Corners region of New Mexico. Local Native communities actually had stories about odd numbers of people getting suddenly sick and dying during years where the pine nut harvest was good, and indeed, 1994 was a good pine nut mast year. Because of abundant nuts to eat, the mouse population exploded and came into a lot of contact with humans, and enough people got sick and died that USAMRIID and the CDC investigated. And they found a virus at the root.

Ongoing practice at the time was to name newly-discovered viruses after geographic locations nearby the site of origin. But this was already facing pushback – who wants to take a vacation to the scenic Ebola River? On top of that, the area and early cases were heavily Native American communities, and before the disease was shown to NOT be communicable, Native groups were facing racism and shunning over this mystery disease.

The Four Corners region didn’t want it to be the Four Corners virus; the nearby Muetro Canyon was proposed but rejected because the Navajo community didn’t want more stigma (and also Muerto Canyon was named after a massacre against the Navajo), and back and forth, and eventually they just called it the virus without a name, AKA Sin Nombre virus.

 I have some thoughts on infectious disease naming that are too long for the current margin to contain, but I will say that I think this is the kind of cool infectious disease naming schema that you can pull off once.

Mice

This is the western deer mouse, Peromyscus sonoriensis. Sin Nombre virus lives here.

Photo of an extremely cute wide-eyed tiny brown mouse with white countershading, caught in a plastic humane trap.
The worst part of biosecurity is having to look at something like this and be like “this thing is the enemy.” Okay, maybe that’s not the worst part.

This is a pretty common strategy of infectious viruses – playing the slow, long game. Humans have a few: cytomegalovirus, herpes simplex virus (especially HSV-1), Human T-cell lymphotropic virus type 1… viruses that lots of people have for their entire lives, and have no idea that they have. 

Compare also things like the common cold or human papillomaviruses that cause warts – shorter lifespan and some chance of symptoms but also not much, really. The immune system eventually clears these out in most cases without help, but they have time and means to spread, and they circulate among us and periodically annoy us, but mostly, they don’t kill us.

The deer mouse is not the same thing as the house mouse Mus musculus, which you’re probably more familiar with. But let’s take a minute here.

There’s mice and then there’s mice

We all know Mus musculus – it’s the common house mouse, which has spread worldwide alongside people. If humans build a town, the house mouse will soon follow. There are a lot of less-common related species of mice, like the adorable African pygmy mouse (Mus minutoides).

We also know the common brown rat (Rattus norvegicus) and black rat (rattus rattus). They’re two related species that have also spread nearly worldwide, and love to hang out with humans.

A phylogenetic tree with two branches: Mice and rats.

But Peromyscus sonoriensis isn’t either of these. Technically speaking, is it a rat or a mouse?

Well, what a great question. It’s neither.

A phylogenetic tree with two related branches, mice and rats - and then a totally different branch, the western deer mouse.

Huh, you might think. Mice are on there twice? If you know your way around a phylogenetic tree, you may wonder: maybe the common ancestor was more like a mouse, and it’s rats that are doing something weird?

Ha. Haha. Hahahaha. No. The real situation is more complicated than you could possibly believe.

Rats and mice have evolved multiple times, with some incredibly weird variations in the mean time.

This is the distance between the western deer mouse and the house mouse:

An elaborate phylogenetic tree showing that a lot of other rats, mice, muskrats, hamsters, gerbils, and other strange things with spines and weird reproductive traits are more closely related to deer mice or house mice than those two are to each other.
It’s trees all over again!

Different genes, same niche

Despite all of this genetic distance, hice mice and deer mice occupy extremely similar niches. Where the western deer mouse is native, it’s completely comfortable cozying up to human dwellings and making its nests inside our big, fancy, warm, dry, food-filled nests.

And deer mice that are widely regarded as the vectors of Sin Nombre virus – the host species that it’s evolved to circulate in. In New Mexico, two studies (one statewide, one in an area where a human was infected) found that about 35% of deer mice had the virus at any given time. Eyeballing it, this lines up pretty well with a “disease circulating stably among the mouse population that rarely spontaneously spills into humans” situation.

…But wait, are deer mice really the only carriers? That second study also found replicating, viable Sin Nombre virus in other local rodents – including the house mouse, mus musculus! The sample sizes weren’t huge, but 3 out of the 9 captured had it!

Note, however, that they only found house mice at one of the sites. There were many more deer mice than house mice. But still, 3/9!

What I don’t know, and what I don’t think anyone knows, is the degree to which hantavirus actively circulates among these other rodents. Are they just getting it incidentally from neighboring deer mice, or do they pass the virus around between themselves too? Is Sin Nombre virus just as at home in them as it is in western deer mice?

The literature is very clear that deer mice are the ones associated with Sin Nombre virus infection. For instance:

The most common hantavirus that causes HPS [that virus being SNV] in the U.S. is spread by the deer mouse.

CDC

But “common house mice (Mus musculus), which are prevalent in urban and suburban communities, do not carry hantavirus,” said Charles Chiu, MD, PhD, professor of laboratory medicine in the division of infectious diseases at the University of California, San Francisco.

2025 MSN article

(Sidenote: this article also quotes one of those New Mexico survey articles I mentioned above, saying that it “found less than 9% of deer mice had the virus.” The study did report that 10/113 deer mice had antibodies to SNV, but it also found that 37/113 of the deer mice had SNV DNA in their system. This is weird, because viral DNA is a sign of an active infection – it’s made by a virus! – but the immune response can linger for a long time after infection, so we’d really expect more mice to have antibodies to SNV than to have SNV DNA. The study does mention that this trend held up across all rodents studied, so maybe this just has to do with the sensitivity of their antibody assay.)

And there are a lot of cases where people got sick, in which the victims knew they’d come into contact with material contaminated by deer mice.

But there are also cases of infection where nobody saw a mouse, and the presence of any mice at all just has to be intuited. Is it possible that Mus musculus is responsible for some Sin Nombre cases in humans?

The public health literature is pretty unanimous about the deer mouse thing, so I’m going to proceed assuming that’s effectively the only way any human gets Sin Nombre virus, but I don’t understand why they’ve ruled out other mice too.

Human

The adventures of a dead-end host

Sin Nombre virus is a transient inside human beings – it’s not adapted here, it doesn’t stay here. We know this because when we isolate the virus from infected humans, it doesn’t easily reinfect deer mice. This suggests that small mutations have to occur to make the virus able to replicate in humans – ones that make it less viable within mice.

[…] which implies that humans are truly dead-end hosts of SNV. Thus, virus evolution is primarily, if not exclusively, occurring in the natural rodent reservoirs.

Prévost et al, 2025

But SNV can infect humans, and a virus has to replicate to make its host sick. How does it do that?

Well, it’s almost always inhaled from mouse-contaminated material. Then the virus somehow gets into the blood stream.

Once it’s there, Sin Nombre virus replicates inside a variety of human cells, but especially likes endothelial cells and macrophages.

Endothelial cells are the guys that line our blood vessels. They grow everywhere the blood vessels grow, which is to say, all over

Macrophages are a kind of immune cell that devours pathogens. The SNVs are captured by the macrophages, and as with all of their prey, are moved into a lysosome – a cellular chamber that turns into an acid bath, designed to inactivate complex biomolecules (and pathogens they’re attached to) trapped within. But the SNV particles escape into the cell membrane just as the acidification starts.

Replicating inside immune cells is a pretty common strategy for viruses. Sure, the immune cells try to spot and destroy pathogens, but they also end up capturing and moving pathogens around a lot, which can be a big boon if the pathogen has a way to just not get killed by the cell.

Some macrophages roam the bloodstream, but others are concentrated in outposts around the body. Some are in the lungs. 

As far as I can tell, Sin Nombre Virus probably gets into the lungs, then infects the alveolar macrophages (and possibly other lung-based immune cells), and then escapes from those into the blood stream where it might infect other endothelial cells. They might also manage to get through tears or thin spots in the alveolar-capillary membrane and get straight into the blood – that’s just a guess.

Replicating in endothelial cells seems kind of overpowered for a virus, right? Like, we have a gazillion of ‘em and they’re all over the body and once you’re next to the bloodstream, it’s an easy highway for a virus to get from one part of the body to a totally different part of the body. to spread from one part of the body to a totally different part of the body – and if you mounted an inflammation or severe immune response, that seems like that would kill the entire host easily and quickly.

And indeed, Sin Nombre Virus does kill its host quite effectively. Ebola, another famously lethal disease, also replicates in endothelial cells. Covid seems to be able to sometimes (in addition to its main habitat in the respiratory tract, an interesting similarity between it and Sin Nombre Virus.)

So is replication in endothelial cells a sure sign that a disease will wreck havoc on the human body?

Well, no. Dengue fever replicates in endothelial cells, and most of its hosts are asymptomatic or mildly symptomatic. Its fatality rate is literally one in a million. And moreover, cytomegalovirus is an endothelial replicator. Like we talked about before, cytomegalovirus of those viruses that’s almost a commensal – most people have symptomless cytomegalovirus infections. (It can cause disease in unborn fetuses, infants, and the immunocompromised, and seems to contribute to cancer risks down the line – it’s not great – but, again, most people have it.)

Also, lots of viruses attack tissues that are essential and would be bad to call the full attention of the immune system to – herpes viruses (another near-commensal genre of virus that most infected carry without any symptoms whatsoever) infect nerve cells, for instance. Lots of viruses infect the lungs, which are famously important, and some of them kill you and some of them are no big deal.

So I think a general lesson here is that the driver of virulence here has more to do with the rate of growth / level of viruses active at once and the degree to which they activate the immune system, not the infected tissue.

Do a bunch of people within the regions where it is have indications of asymptomatic or past infections?

This is a great question. After all, mice have it quietly, and people seem to have the capacity to carry or fight off a lot of infections quietly without notable symptoms. Are we sure this isn’t the case for hantavirus?

Well, so far as I know, nobody has checked.

Wait, can we talk about the actual disease?

Yeah, fine I guess.

According to the CDC, the early symptoms of Sin Nombre virus disease in humans – AKA hantavirus pulmonary syndrome (HPS) or hantavirus cardiopulmonary syndrome (HCPS) – emerge 1-8 weeks after acquiring the virus. They start out, like a lot of fucked up viral diseases, with generic symptoms:

  • Muscle aches
  • Fever and chills
  • Malaise
  • Headaches
  • Abdominal pain

Though “aches” might be a standout. University of Colorado Health (Colorado has a lot of SNV cases) reports that severe muscle aches, especially in the back and lower extremities, are a common hallmark of HCPS cases. (Hey, I got severe leg pain when I got shigellosis on purpose too – shigellosis, much like Sin Nombre virus, is an infectious disease that notably does not target the legs. What’s up with that?) 

4-10 days after this, the cardiopulmonary stage of disease begins, AKA “the part that kills you”:

  • Coughing
  • Shortness of breath
  • Fluid buildup in lungs/chest
  • Tachycardia
  • Arrythmia
  • Cardogenic shock
  • Respiratory failure

HCPS has a 40% death rate. Deaths occur 24-48 hours after the start of the cardiopulmonary phase. There is no vaccine or known effective antiviral.

Buying time

If you get HCPS and reach the cardiopulmonary stage, the thing that will save your life is a medical technology called extracorporeal membrane oxygenation (ECMO). An ECMO device draws large volumes of blood out of the body via inserted tubes (called cannulae), runs the blood through an artificial lung (called a membrane oxygenator) to remove carbon dioxide and reoxygenate the blood cells, and puts the blood back in the body.

HCPS seems to be one of those diseases where the body can rally and fight off the disease, if it has enough time. I attended an online lecture delivered by clinician Dr. Greg Mertz and this is the sense I got: SNV doesn’t permanently damage the heart and lungs, it just overwhelms them. If ECMO takes over while the heart and lungs are out of commission and keeps plenty of oxygenated blood in the system, the immune system can finish the job and the heart and lungs can go back to work afterward. 

If you go to a hospital with symptoms and they make a presumptive diagnosis of HCPS, you can opt into having the ECMO cannulae inserted in advance – they won’t start ECMO until you go into shock (because your heart/lungs fail), but if you do go into shock, they’ll be able to start re-oxygenating your blood immediately. At this point, doing this changes your odds of survival from 50% to 80%.

(I see that in my notes from that talk, I also wrote “Do not go into shock”, as it leads to “DEATH V FAST.” So if you get to decide at some point whether or not to go into cardiac shock in general, try not to.)

So if you think you’ve been exposed to SNV and 1-9 weeks later you start experiencing arrhythmia and shortness of breath, proceed straight to a hospital with an ECMO device.

ECMO devices are not extremely common. You can find out which hospitals near you have ECMO devices on the Extracorporeal Life Support Organization website. If you happen to be reading in Mono County, your nearest ECMO is probably in Reno Renown Regional Medical Center.

Do you need to worry?

Do you actually need to know this? Well, every year in the US, about 15 people die from being struck by lightning, and about 8 people die from hantavirus, so if you’re not in a hantavirus hotbed, almost certainly not.

…But if you’re one of the 12,000 residents of Mono County, then yeah, probably. Mono County has had an unusually high 3 HCPS deaths from hantavirus this year, so you have a 0.025% chance of dying from HCPS. 

You might actually be more likely to die from hantavirus as in a car crash (0.012% chance in any given year.) 

(Sidenote: Naively, I’d expect Mono County residents to have a 0.000004% of dying by being struck by lightning like anyone else, but if you actually look into it, Florida specifically and the southeast generally have a really disproportionate number of lightning strike deaths. We should probably stop rhetorically treating getting struck by lightning as an entirely random act of god and start thinking of it as a physical event with contributing factors like everything else.)

Questions

Why is the geographic range of hantavirus infection so limited?

Western deer mice cover live in the west half of North America.

Let’s go back to that map of USA state-level infections.

Hantavirus cases in the US are ALMOST all in the west. But a bunch of eastern states have had 1-12 cases.

So mostly, that makes sense. But how are there ANY cases in the east half of the state?

SNV’s weird siblings

Those other HCPS cases on the east coast? Well, they’re not (or at least, not only) people who happened to travel from the West Coast, and they’re not (or at least, not only) far-ranging western deer mice.

Those are the work of other, rarer hantaviruses, carried by other rodents, spilling over occasionally into other humans in the same way, causing HCPS, and with about the same fatality rate.

These diseases include:

Each of these is really rare, even rarer than SNV. But that’s odd in and of itself, right? Like, do all of these host species just interact less often with humans than deer mice in the Western US? Are the viruses less common in their hosts, or even less transmissible than SNV? The answers might be out there, but I don’t know that they are.

I ’m also curious about the California county-level breakdown: why Mono County? (And note that this is raw cases, not cases per capita – Mono County has a tiny population.) Is it because there are more deer mice? Or is hantavirus localized to certain populations of deer mice?

Well, here’s this other data on seroprevalance of hantavirus among captured mice in various counties. Sure enough, Mono County has the highest seroprevalance, at 31%, but apparently 25% of tested mice in Santa Barbara County also had SNV, and Santa Barbara has a lot of people in it!

So why does Santa Barbara see very few human cases, while Mono County has a lot?

Here’s my guess at why: it has to do with the houses, and it has to do with mice. Mono County has a lot of barns, sheds, and vacation houses that are left empty part of the year. The classic situation where a person gets SNV is cleaning out a shed or outbuilding that’s been inhabited by mice, kicking up a lot of mousy dust and particles, and inhaling SNV. A shed or a building that’s left for the summer or winter is a nicer place to build a shelter than under a bush, but it’s still not that cozy – it might not have food inside so the mouse still has to forage a lot, and it might get very cold or very dry. There might not be many other buildings nearby. A region-adapted, mostly-wild deer mouse, is going to have a better go in an outbuilding then the urban Mus musculus – and indeed, every mouse I’ve seen or caught around my home has been a deer mouse.

Santa Barbara County is much more urban and has a warmer climate. I bet the mice that people encounter there are almost all Mus musculus. I bet all the Santa Barbara deer mice live in the wild, outcompeted in cities by the larger and more urbanized mus musculus.

And the deer mice are god’s chosen carriers of SNV, and the Mus musculus aren’t. It’s just a deer mouse disease. So it’s much more likely to crop up where people interact with deer mice, and they do so a lot more in these rural, more-wild environments.

It’s an apparent puzzle that makes a lot of sense once you just ignore the human health angle for a second. SNV is a deer mouse disease that circulates among deer mice. Think about which mice want to live where. Humans, as is often the case, are providers and users of nests, and otherwise, are only relevant incidentally.

But wait, can we check this?

If my model is correct, areas that have high SNV caseloads will:

  • Be mostly rural (probably without major cities?)
  • Have extreme climates
  • Have a lot of outbuildings, plus homes that are inhabited seasonally

It would also be interesting if they’re clearly geographically clustered – like if specifically one part of the world is a hantavirus hotbed.

Yeah, let’s look at some other states that get a lot of SNV cases. I don’t expect to get great data at anything lower than the county level. Colorado and New Mexico both get more SNV cases than California, and have county level data.

I tried to look into this further, and ran into kind of a dead end. Or maybe I’m just wrong.

The counties with the highest rates include La Plata and Weld counties in Colorado, and Mckinley county in New Mexico, which is such a standout that it dwarfs the others.

La Plata County has a population of 55,638 with the largest city (Durango) at 10,000. It has some parks and overlaps a national forest, no major ski areas.

Weld County has several cities and a population of 329,000. (It contains parts of some large cities that are on the border so it’s hard to break down for sure, but a lot of people live here.) Okay, not looking great. It’s fairly flat with some mountains, and mostly farming country.

Mckinley county has one city of 20,000 and no other cities, but a lot of smaller towns and census-designated places and such. Its total population is 73,000, which is pretty big! I can’t find indications that it has a lot in the way of seasonal dwellings – there aren’t many ski resorts. The county does seem to be pretty dispersed, housingwise, which might imply more outbuildings.

So, uh, none of this actually cleanly supports my mode, but it’s not necessarily evidence against it either. We might just need data on which kinds of mice are common in human dwellings in these areas, and how common mice are overall.

What makes Andes virus infectious interpersonally, and SNV not?

It seems like ANDV builds up in the salivary glands of humans, and saliva is its mode of transmission. SNV doesn’t do that.

SNV collects in the lungs and heart. ANDV collects in the heart, lungs, and salivary glands, and tests studies have indicated virus in fluids from both of these. It seems to spread via saliva, droplets, and aerosols. Sex and close contact are major risk factors. Otherwise, ANDV has a similar features and fatality rate to SNV.

Saliva also seems to be how deer mice spread SNV and ANDV among each other – both of them show up in the salivary glands of their host mice, but only ANDV inhabits human salivary glands.

(If we could somehow prove that ANDV could spread from the lungs, well, that would suggest some new mechanism also in play – but that seems hard to test, given that the mouth is, you know, between the lungs and the rest of the world.)

That said, I actually don’t understand why ANDV isn’t airborne, or otherwise transmitted from the lungs. The mousy particles that infect humans seem to be from kicked up dust and such, so there’s reason to think it could be aerosolized – maybe the virus particles don’t escape the lungs very well?


That’s all the things I know about Sin Nombre virus, plus some things I don’t. Let me know if you have the answers. In the mean time, don’t die of cardiopulmonary shock. I, for one, am doing my best out here.

This post is mirrored to Eukaryote Writes Blog, Substack, and Lesswrong.

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Did photos of the 1917 Miracle of the Sun at Fatima prove the sun was at an impossible place in the sky?

Man, I don’t think so.

Background

The Miracle of the Sun at Fatima was a 1917 event predicted by several children who said they were visited by the Virgin Mary. Thousands of people showed up in the field in Fatima at the predicted date, and witnessed odd celestial phenomena. It was validated by the Catholic Church as a true miracle.

Accounts are not unanimous, but witnesses generally reported the sun as moving around, changing colors, and “spinning” in the sky.

This has a couple interesting features: It was documented at the time and many thousands of people were there, and later gave their eyewitness accounts – and it was photographed by journalist Judah Bento Ruah for the Portuguese newspaper O Século (“The Century”).

The sky does not actually show up in the photos, which is expected – photographing the sun was especially hard in 1917, and Ruah didn’t show up expecting the sun in particular to be doing something weird. (Nor were the pilgrims – they were expecting a miracle, but didn’t know what it would be.) Ruah’s photos, first published soon after the event, sure do show a lot of people gathered in a field, staring rapt at the sky.

Dr. Phillipe Dalleur analyzed these, and wrote a paper (“Fatima Pictures and Testimonials: in-depth Analysis”, Scientia et Fides, September 2021) arguing that these photos indicate that the light source in the photo corresponding to the observed sun is at about 29°, not at the expected solar angle of about 40° – so it’s concrete evidence of a true miracle, right?

More recently, Ethan Muse at Motiva Credibilitatis uses this point to argue the same. Muse and Dalleur points to other aspects of the event too – e.g. even if the apparent odd behavior of the sun was due to really weird meteorological conditions, how were the children apparently able to predict that? What were the people seeing? What were the children reporting?

See e.g. Evan Harkness-Murphy at The Magpie for possible explanations for some of these other attributes that do not require supernatural explanations.

But as a woman with a fondness for A) very concrete claims of unexpected phenomena and B) OSINT, I’m only going to be looking into the angle-of-the-sun thing.

Because I do agree that if these photos showed that the sun was at an odd angle, that would be evidence for a miracle. The photos were first published days after the event, so while there were ways to doctor photos at the time, they would have had to have done it quickly. The photos were taken by a Jewish journalist who did not have a clear motive to fake evidence of a Christian miracle (attributed to the Virgin Mary). Lots of people corroborated the date and approximate time of the event, and the sun is, of course, one of the most reliable physical phenomenon there is. If that can change, maybe it has to be God doing it.

But I read Dalleur (2021) and I’m really not sold that the photos indicate anything celestially weird going on.

Dalleur’s data

Most of Dalleur’s argument comes from one photo, listed on the Shrine of Fatima website and in his paper as D115. It’s this one – we’ll be referring back to it a lot.

A black-and-white photo showing many people congregated on a rocky hillside, in suits and shawls and dresses, mostly staring up at the sky.

I’m going to ignore the part in Dalleur’s paper about the dry parts on the clothing. I think it’s explainable by conventional means. People don’t necessarily stay at exactly the same angle for long and shift around, and might be uncovering and covering themselves to dry off after being rained on at idiosyncratic angles. I don’t think this tells skeptics much about the light source.

Dalleur has clear photos; we don’t

A lot of Dalleur’s argument has to do with shadows in the photographs. The shadows are really faint, which is what we’d expect – everyone agrees that it had recently stopped raining, so the sky is cloudy and the lighting is diffuse.

The public photos of these photos are low-resolution and do not really show shadows. Dalleur obtained high-quality scans of these photographs from the originals at the Shrine of Fatima. These versions show the detailed shadows Dalleur is using for his analysis, and as far as I can tell, aside from cropped excerpts included in Dalleur’s paper, these higher-resolution versions are not available online.

Compare what sure looks like the shadow of this cane in Dalleur’s version, to the enlarged version of the photo I was able to download from the Shrine of Fatima’s website. You can’t really tell there’s a shadow in the lower-res public version.

Left: Excerpt from Dalleur (2021). Right: same version from publicly available version of the photo.
The shadow in question. Like, it’s faint either way, but it looks like a shadow on the left and I’d be hard-pressed to tell that it was anything on the right.

More shadows would be really useful for analysis. (I sent Phillipe Dalleur an email asking for the full versions but haven’t heard back yet.) It would be much easier to evaluate his claims if these were available.

On using the sun in OSINT

I went into this hoping that one of the photos had a specific shadow. Nick Waters at Bellingcat outlines how to use shadows for chronolocation – that is, identifying when a photo was taken.

In short, if you have a photo with an object lit by the sun and casting a shadow –

  • Where the casting object is roughly vertical
  • Where the shadow is cast on level ground

And…

  • You know where the photo was taken
  • You know what date the photo was taken
  • You know vaguely what direction the shadow is pointing

…Then you can tell what time the photo was taken.

If you have other parts of this information, like you do know the time, you can also tell e.g. where the photo was taken, or at least narrow it down to certain parts of the world.

In this case, we know where, when, AND what time the photo was taken – at least roughly. Our question is whether all of this information lines up the way we expect. If the shadow looks different, then the light source must be different, like, say, if the sun or a sun-like object is moving miraculously around the sky.

But alas, there is no shadow in these photos that meets these criteria. This isn’t surprising. Everyone agrees that it was raining shortly beforehand, so the sky was still cloudy and the lighting was diffuse. (Also, again, the publicly available photos are so low-quality you can hardly make out any specific shadows at all.)

All of this is to say that Dalleur has to use much more complicated methods to estimate the sun’s angle, and I see why. There aren’t good shadows for the simpler method described by Waters.

I just don’t think the methods he used instead are good enough to draw the conclusions he draws.

Are there really two light sources?

First of all, Dalleur’s argument includes an assumption that there are two light sources casting shadows – the light source corresponding to the thing the witnesses identified as the moving sun (“Light source a” AKA Lsa), plus a diffuse, higher-up light source, probably sunlight bouncing off and/or filtering through a cloud (Lsb).

Dalleur’s proposed setup.

A quick note – I grew up in Seattle so I’ve experienced plenty of overcast and weirdly-sunny-sort-of-overcast days. I don’t remember seeing a double shadow under these conditions. I can’t rule it out, and of course Dalleur isn’t claiming for certain that Lsa is the sun or works just like the sun, but I wouldn’t go in expecting a double shadow in these conditions.

In any case, Dalleur only points out one example of a double shadow, cast by a rock on rocky ground. (Left, below.) While the excerpt does look like a double shadow, it could also be the shadow of the rock next to it, or the ground color, or water from the rain that hasn’t dried yet.

There’s also an example of the two light sources cast on a curved umbrella handle (right, below), but the “separation” between the two light sources could be a darker part on the wood of the handle.

Excerpt from Dalleur's paper, captioned: Figure 6. D115 details. Left: double shadow, a (from LSa) and b (from LSb) of a flat
stone on a sloped surface, (☼: shadowless area; arrows: direction of LSa
and LSb rays). The deep black of a+b bares a low ambient light. Right: LSa
and LSb specular reflections on umbrella’s handle. Note also the lapels
shadow on the upright jacket front, and the reflections on the cornea of
the eyes.

Like, it’s just the rock. I guess all I’m saying is that if you assumed there was only one shadow cast, and evened out Lsa and Lsb, that would look more like one light source higher in the sky (more like the expected location of the sun.)

Doodle of shadows cast from a rock. Two light sources (one high up, one at a sharp angle) cast two shadows, but it looks kind of like the shadow cast from one light source that's just between the two, altitutdewise.
Like, these would look pretty similar, especially if the shadows weren’t clear and all you had to go from was one old photo.

I’m unclear to what degree these are explicitly built into the final analysis that gets us to the final 29°-Lsa-angle number. Dalleur looks at 4 shadows and as far as I can tell, only one of them (this rock) features a double shadow.

In any case, Dalleur spends time on the “two light sources casting shadows” thing and I’m not sold based on the example given.

I’m pretty sure there’s too much assumption to make the math reliable

First of all, here’s a (angle-accurate) sketch of the situation in question. According to Dalleur and to live testimony collected by John de Marchi in “The True Story of the Miracle at Fatima”, the miracle takes place for a few minutes somewhere between noon and 1:30 in solar time, Fatima, Portugal, October 13 1917. so according to SunCalc.org, the sun should be at a solar altitude of 39°-42°. Dalleur agrees. He suggests that the apparent “sun” (his Lsa) angle in the photo he analyzes is 25°-32°.

Diagram of the expected solar altitude (39-42 degrees in the sky) vs Dalleur's estimated Lsa altitude (25-32 degrees in the sky). They're definitely different but they're not THAT far apart.

To be clear, if this were true, astronomically, this would be bananas – the sun is so reliable that if we had a good piece of evidence that it had been anything else (say, there were a sundial on level ground in the photo that clearly had an incongruent shadow) we should be very surprised indeed. But I show you this drawing so you get a sense that we’re not dealing with, like, a hugely different angle, especially as estimation error comes into play. Which it will.

As far as I can tell, the main argument about that 29°-angle comes from photo D115 (the same photo we’ve been looking at so far) and some math about photo optics and what “pitch” and “roll” angles the photo was taken at.

I can’t pretend I totally understand or can replicate the math used. But I can tell there’s a lot of estimation. (See around Figure 10 and 11 in the paper.)

Figure from the paper showing various angles used by Dalleur to model the photo environment and light source.
Figure 11 from Dalleur (2021). Featuring: More optics than I know what to do with. Sorry.

While not every estimate used is spelled out, it looks like Dalleur estimated:

  • Where the obscured horizon is
  • the height the camera is at
  • how far the camera seems to be from the reference points
  • hanging thread from some of the clothing in the photo, although we’re not sure what and he acknowledges that some other hanging thread on a different person is at a different angle (because of wind)
  • The camera being correctly leveled every time, even though we’re told Ruah was moving the camera and taking pictures at an incredibly fast (for 1917) rate of one per minute
  • the slope of the ground
  • angles of the 4 shadows indicating the direction of Lsa (more on this soon)
  • The focal distance of the camera, which was set manually by the photographer and which is estimated partly by using a reference for what good photography practices at the time were.

Even if the math comes up as putting the sun at a ~29° altitude, I’d be shocked if there’s not enough error in there to account for a possible 8% difference in actual solar/Lsa angle.

Also, those shadow angles are sus

As best I understand it, the shadow angles are the really important part of this calculation. The whole thing hinges on those angles being unexpected. But we’re looking at total 4 shadows, none of which are cast on level surfaces, and some of which I don’t even think are cleanly cast shadows indicating the direction of Lsa. For 3/4, Dalleur does not indicate what he thinks these angles are.

Figure 10 from Dalleur (2021.) The photo from above, highlighting 4 shadows whose angles Dalleur used to estimate the angle of Lsa.

One of these is the double-shadowed rock from before.

Another (bottom right of the above image) is, apparently, another rock. I don’t even know what precisely I’m looking at here. But it doesn’t look like it’s cast on a level surface. That angle is going to drastically effect what angle the shadow seems to be at.

Another is the hand of the boy on the left side of the photo, and again, I’m not sure what I’m supposed to be gleaning here or what Dalleur thought that angle was. Is it the shadow of the pocket on the thumb? Thumbs are curved! His hand might be angled!

Another is on this hat.

Another figure from Dalleur 2021, captioned: Figure 9. Perspective direction of shadows on D115 (denoise by Topaz®; contrast by
Blender®). The projected direction of LSa rays varies from 32.2° to about
37.40° (symmetrical reflections on a perpendicular knob). 1: tangent shadow
of the crown on the brim of the hat. 2: dark grazing shadow on a back white
object, of the brim in contact with the stick. 3: thin brim’s shadow on the
buttock, almost in contact with it. 4: shadow on crown’s crease.

Look at that line 4 on the top of the hat.

The same image from the figure above but without overlays, indicating that the shadow is indeed kind of vague. That's a hat, alright.

To me that could easily be the fold on the “bowl” of the hat, and not something that would tell us much about the specific angle of the light source. And either way, it’s cast on the “bowl” of the hat, which we wouldn’t assume to be flat or level.


I think someone with more patience for trig than me, or better yet, experience with Blender or another 3d modelling software, could take a crack at this more definitively – like, setting up this scenario with some models and playing with the angles and light sources (Blender can definitely simulate one diffuse light source vs. two light sources at different angles, etc) and seeing what looks most like the shadows in the photos. I expect the shadows in the photograph will be totally in line with natural phenomena and the natural position of the sun.


Thanks for reading – this is a post a friend encouraged me to hammer out. I’ll link his related analysis when it’s up. I’ll be back to biosecurity soon, I promise. I have a freaky virus to tell you about and everything.

This post is mirrored to Eukaryote Writes Blog and Substack.

Support Eukaryote Writes Blog on Patreon.

Ave Imperator, morituri te salutant: a review of Skibidi Toilet

Art has died and been reborn a thousand times now. Join me at its graveside once again. Let us speak a few words for what once was. Let us imagine the inconceivable and hollow future ahead without it. If you weep, I will pass you my handkerchief. And let us all pretend to be surprised once more when it bursts out of its coffin, on fire, and singing.

Do you know what song it sings this time? I think you do.

Skibidi Toilet is a wildly popular animated video series. Particularly, it is popular among the youth. Most millennials-and-above I’ve talked to go glass-eyed when its name is invoked. Their souls momentarily leave their bodies, but float back down again in short order. “Why?” they ask, laughing. “Why would you watch that?”

And it’s not completely naive. There’s always been vapid absurd art popular among kids, and wise adults remember and know this. On the internet, it’s stick figure fights and zombocom. Saladfingers and Badger Badger Mushroom. Baby Shark and those weird Spiderman Finger Family Dancing Elsa Learn Colors videos. 

Skibidi Toilet is different from all of those. Skibidi Toilet is, like, actually okay.

At time of writing, the series stands at 26 seasons and 78 total episodes – but most of the episodes are under a minute long, so it’s only 2.5 hours total. Created by DaFuq!?Boom!, AKA Alexey Gerasimov, Skibidi Toilet is a serial narrative about the unfolding conflict between two groups: the Skibidi Toilets, which are human heads that come out of toilets, and what I think of as the AV Army – humanoid figures with cameras, speakers, televisions, and so on for heads. 

The AV Army is completely nonverbal. The Skibidi Toilets sing, but only the one song, incessantly. There is extremely little verbal or written language throughout the series. Even “skibidi” is a nonsense scat word. (It’s been speculated that this has to do with why the show has been so popular with children, and with international audiences. Is that true? I don’t know, maybe.)

Yes, obviously the toilets can move. You cannot even begin to fathom what these toilets are capable of.


Looking at Skibidi Toilet for the first time, you might think it was made in a janky 3D engine. And you’re partially right. What you might not realize is that it’s made in Source Filmmaker, a 3D engine developed by Valve in 2012 to make animations with video game assets. You might not realize that the series is littered with video game assets and models from games like Half Life and Counter-Strike, and that it was inspired by animations done with Garry’s Mod.

Source Filmmaker is the logical extension of machinima, e.g., movies shot in video games. While Source Filmmaker is definitively a piece of animation software that happens to run on game assets, machinima even in “real” games is a rich genre. Consider Emesis Blue, a psychological action thriller made and set in the world of Team Fortress 2; Whitepine, a sensitive and artistic period drama/mystery made in Minecraft; and of course, the award-winning documentary Grand Theft Hamlet.

Historically, these all stem from an interesting question: Why would you want to watch someone else play a video game?

A brief history of machinima


This makes more sense then you might think. I think for a lot of us, our first memories of video games were watching someone else play it. Friends. An older sibling. Waiting for your turn on the controller, or handing over the reins to your sibling to see if they can do the hard part for you, or just watching. 

It’s oddly enchanting to watch someone else play: you get to see the visuals. If there’s a story, you still get to experience the story. If they’re good at the game, it becomes like watching sport. Earliest preserved game footage – not games, videos of people playing games preserved for reasons other than technical demos of the game itself – are of PVP combat or speedruns, i.e., skill. 

But even decades ago, people became interested in games as artistic medium. Telling stories about things that might have happened in the game, but then really getting wacky with it, just using the game as artistic expression.

I think it’s interesting to note different levels of storytelling in this process, all of which are still widespread:

There’s the narrative a game has in the first place. You’re there to rescue the princess, you’re there to slay the princess, whatever. As a viewer, you might have the added narrative layer of the player learning about or reacting to the story, but the root story is the one the game is designed to tell.

Then there are stories invented by the players that still operate under the game’s world and logic.

Then there’s the full abandonment of the game mechanic aside from as stage. Garry’s Mod can be used to make games and is designed to open up this end of the spectrum, and Source Filmmaker completely departs from the game premise – Skibidi Toilet takes place far on this end of the spectrum, maybe even off of it.

Skibidi Toilet remembers its heritage in video games – video game characters and models, the first-person camera angles, the fact that they’re literally shot from a person’s head perspective, guns and weapons in arms akimbo at the side of the screen, enemies bearing down on the POV – these are all familiar video game features. Later, there are HUD overlays. It does not occur to you at first to wonder why you’re seeing it this way.

But Skibidi Toilet has a lot up its titanic sleeves.


The first smoldering clue that this series has something really interesting going on, over the first dozen or so episodes – which is to say, the first few minutes – is the dawning realization that the camera is always diagetic. Every single shot has a camerahead behind it, filming. 

With this realization, some of the more inexplicable elements suddenly make sense. The toilets are always lunging straight for the camera because he is an enemy. 

Do you need arms to have an arms race?

It’s possible you’re wondering: okay, so that’s the basic plot, but what is Skibidi Toilet, like, about? Does it have themes?

I’m so glad you asked. Skibidi Toilet is about technological escalation during warfare.

The nature of the conflict changes dramatically over the course of the series. Skibidi Toilet is breathtakingly internally consistent about who has what capacity and when. 

For instance, perhaps the first technology we see change hands is size. From very early on (even in the first few otherwise dubiously-relevant episodes), we see that there are small toilets and large toilets. There are a few plattoons of regular-sized toilets led by one very big toilet, maybe up to many stories high. 

And yet, all of the AV Army we see at first are about human-sized. When the first large camerahead appears, it’s maybe twice as tall as a human, kind of a buff Bigfoot creature. Strong, but not a game-changer. The introduction in Episode 18 of an actual many-stories-tall AV kaiju – pardon me, I’m being told by the loyal soldiers of the Skibidi Toilet Wiki that they’re called “titans” – deeply transforms the battle. By the very next episode, we see cameraheads relaxing while the titan does its work fighting, and into the future, cameraheads seem to go from constantly afraid to living more of a relaxed lifestyle on the winning side. Titans remain a crucial tactic for the rest of the series. 

The titans also become the first of a trend of recurring characters, which I suppose makes sense – a few titans are presumably substantial investments. (Obviously, we never get any idea where or how new technologies are invented, or how any of these soldiers are born or created, or where resources come from. It’s not ratfic, it’s Skibidi Toilet. Relax.)

Not all advancements are especially useful. We first see a camera on gangly metal crab-legs in Episode 12, alongside an advancing camera army. It’s a few episodes later when we see toilets on crab legs. The advantage of this is unclear – the toilets already move, and maybe that’s why this doesn’t confer a strong advantage. We see some toilets on crab legs afterwards (maybe they’re going a little faster?), but they’re not uniformly better. 

As goes war. Unpowered military gliders offer some unique advantages, like fuel efficiency, deploying troops together rather than dispersed as if landing by parachutes, and being unconstrained by certain aircraft treaties, and multiple countries developed them in World War II. But gliders are not an important part of any military strategy today – they’re just not as good as planes and parachutes and so forth. We tried them out, we went back – the technology is still around, it’s just not optimal. That’s what I see the situation with the crab legs to be.

Far more impactful is the mind-control-parasite strategy. I think this might have been inspired by the AV army’s use of a camera with a toilet base in Episode 16, but it’s the Skibidi Toilets that pioneer the technology: infiltrating a large AV warrior by using a smaller-than-life toilet, living inside the host’s body. (Helpfully indicated to the viewer with crackling lines of electricity around the head of the infected.) The AV Army later develops a crude variation, in which human-sized cameraheads hijack a toilet Titan, but it’s not quite the same. The hijacking of powerful AV titans remains a useful Toilet strategy for the rest of the series.

The AV Army, in response, looks for solutions elsewhere – they invent sound weapons that play the THX riff, disabling both regular toilets and parasitic toilets inside hosts. They also produce a TV-headed woman who teleports, introducing who I believe is the first of the non-titan recurring characters. Interestingly, I think only her or maybe a very small number of other AV warriors can teleport – admittedly breaking the “technological development” pattern, because you would think that if she could do it, others could be taught the skill. They’re all mechanical, right? 

This is actually kind of confirmed in the universe – we see AV people both large and small being “repaired” with mechanical tools rather than bandaged by doctors. So maybe there’s some story there, or maybe not. I don’t know. I didn’t check.

Either way, the progression is tightly adhered to, and this is only a tiny smattering of the developments. Weapons and strategies and body forms of both sides expand and diversify over the series. The Toilets even produce some true body horror combatants with the body of a camerahead and the head of a Skibidi Toilet, if you can even imagine such a thing.

At one point, an AV warrior’s arm is ripped off on the battlefield. It detaches an arm from a nearby dead toilet construct and just attaches it onto itself, where it starts working right away. Insofar as Skibidi Toilet has worldbuilding, I think this moment is crucial – it shows the depths to which these two seemingly disparate species are innately interoperable, and goes a long way to explaining the rapid pace of the (to to speak) arms race throughout the series.

This rapid technological exchange has the obvious Doylistic interpretation: it’s more exciting to show people something they haven’t seen before, and the creator gets new ideas the longer the series runs. Also, the entire series is built on “blending components of 3D models together” – see human-toilets, human-cameras. But the attention to detail and consistency? That has to be intentional. Watsonianly, this is a story of two powerful biomechanical species in a technological arms race.

There are a few weapons that emerge later that don’t feel like they follow this pattern, except for in a metatextual way. As the series matures, its aesthetics mature too. I think the artistic high point of this is when we see an AV army champion, facing a toilet squadron, wield a pair of plungers like swords. As far as I recall, we never saw any plungers before this, but it feels, instinctively, like an older and more disciplined form of warfare. We know in our bones that this plunger camera is cool. A real smooth operator.

But down the line, there are just knives. Before this, we saw toilets die to two things: flushing the head, and sort of generically in explosions. But by episode 50 or so, an AV Army guy just stabs a toilet in the head, with a knife. There’s blood (albeit in a 2012-video-game particle-effect-cloud kind of way). In addition to the space-age ray guns or directed sound weapons, realistic guns enter play around this time. 

The psychological effect of this is jarring. You are reminded that DaFuq!?Boom! is not under the thumb of any major American television network. I think it’s an interesting artistic choice, but I’m still not sure what to make of it.


Oh, and other hallmarks of war are all over the series. In Episode 21, two cameraheads apparently interrogate a captured toilet in a dark room regarding the location (or… something) about a particular recurring Toilet Titan (this one has the head of the G-man from Half Life. He is called the G-Toilet, according to the Skibidi Toilet Wiki. I mostly didn’t refer to outside information, since I think personal interpretation is part of the fun of such a surreal piece of art, but a friend pointed out that the model is recognizable if you’ve played Half Life, which I haven’t, and I reluctantly admit that “G-Toilet” is a better name than the one I’d come up with, which was “Titan Toilet Richard Nixon.”) Anyway, that’s fucked up, right?

Two cameraheads torture a toilet for information about the Titan Toilet Boss. Or something.

And we watch as the cameramen, in their new hegemony, hound and beat single toilets (who they now outnumber.) They patrol the streets but in a relaxed, this-is-just-my-day-job way. They sit on the empty husks of defeated enemy toilets.

Even in the later episodes, when the apparent primary drivers of the action are huge familiar titans, Skibidi Toilet never quite forgets the little guy.  After one brutal toilet attack, the POV camerahead is injured and we see its vision black out… but reawaken, moments later, in an AV hospital ward. There are medical personnel and cameraheads in wheelchairs. We’ve seen titans being repaired but we’ve never seen regular cameraheads being repaired. This too reinforces that the tide is turning in the AV Army’s favor – that it’s now possible to give care and repair to the previously-disposable footsoldiers.

(Does being on the winning side of a war mean regaining your ability to exercise your humanity? Discuss.)

I think my favorite episode is 58, after the toilets have taken the lead. 

It features a late-stage-Skibidi Toilet-typical battle involving both smaller combatants and titans. who look cool, and do cool stunts. At the start of the episode, large bladed toilet drives by with a camerahead impaled on one of its sword-arms. (At first, this seems unreasonably cruel, but remember we’ve also seen the AV Army sitting on the husks of dead toilets – is this really any different?)

Anyway, the episode refers back to – almost centering – these three little identical regular cameraheads, clinging to a streetlamp amid the chaos. We’ll never get to know them as individuals. We’ll never even know if we’ve seen them again after this episode. But we are given space to care about their survival and personhood for just a moment.

Wait, maybe you don’t want to watch this

The series does drag. I don’t want to overstate it. The realism is superficial; we have no idea where either of these groups come from, or why they’re fighting. We don’t know how they produce new soldiers, or where they’re fighting, or why they can’t just build one titan the size of the city and be done with it. Often a previously unseen enemy titan will emerge from somewhere at a dire moment and it’s unclear where it came from or how the latest skyscraper-sized Titan Toilet could have remained unnoticed until right now. Doesn’t the AV Army have literal sentient security cameras? How did you miss that, Harold?

We have indications that both sides have culture and internal lives, but we don’t know anything about those. Without a good explanation like “toilet mind control parasites momentarily creating turncoats”, literally every toilet is fighting literally every camerahead – the war is fixed, and the war is absolute.

This gets draining, especially combined with the short-format. See, Skibidi Toilet is highly responsive to the Youtube algorithm. Around the start of Skibidi Toilet, Youtube really liked Shorts (phone-screen-aspect videos under a minute long), and so dozens of episodes are that short. Many are under 30 seconds. The effect of that is that each 30 second episode has to have an entire and complete arc, and the arc usually ends in “a Skibidi Toilet throwing itself disorientingly at the camera.” They are always singing the same song. 

I watched it for the first time in one two-hour sitting, and that was probably part of it. I have enough Gen Alpha joie de vivre that I can take a lot of 30-second absurd shorts, but… maybe not that many. 

I can’t completely compare it to qntm’s proposed film concept “One Hour Fight Scene”, because Skibidi Toilet has more diversity of setting and arc than that, but the repetitiveness and even the constant escalation is just… grating.

So I’d advise not watching it all at once – but that’s bad advice too, because I discovered that the wordlessness and repetition lends it a dreamlike quality of transience. 24 hours after watching Skibidi Toilet, you’ll be like “what happened last time? Which titan just did what? Have we seen that character before or not?” I legitimately found that taking notes helped. Maybe there’s just no way to comfortably ride this wild steed.

For what it’s worth, Skibidi Toilet is mostly self-aware about its descent into formulaicness, and there are a lot of small moments playing with this that make the series sparkle. When the AV Army steals secret documents from some kind of Toilet research base, the documents… just write out the lyrics of the Skibidi Toilet song in bungled Cyrillic. The plot beat is just that familiar one of stealing big enemy plans. It doesn’t really matter what the plans are, and this deep in, you know this and I know this and DaFuq!?Boom! knows this. 

At one point, we see a camerahead scientist “drink” a cup of coffee by dumping it down the front of its shirt. 

And later on, a human man apparently representing DaFuq!?Boom! himself shows up in the series – a face we’ve previously only seen as a youtube avatar, suddenly breaking the assumed laws of the narrative by appearing in his own creation. I won’t spoil any more, but it’s a buck fucking wild ride.

I don’t want to assure you that it’s worth it. I don’t know you. I won’t say that. At the end of watching some small toilets fight some small camera guys, you’ll be rewarded with a much bigger toilet fighting a much bigger camera guy. Does that sound fun? Hey, if it does, I know a series you might like.

Found footage and horror

Skibidi Toilet is not really a horror series, but it takes a lot of its beats and inspiration from horror.

The oldest kind of internet-original video horror is screamers. It’s the cheapest and easiest way to make horror – take a pretty normal piece of footage or imagery, let people watch it for a few minutes, then BAM! Sudden cut to a creepy face. It’s the digital equivalent of yelling “BOO” behind someone’s back, automated for your inconvenience. Ghost Car [content warning: bro, read the room] is a classic of the genre, 19 years old and with 41 million views at the time of writing. The hook of early episodes of Skibidi Toilet is not much different from 19 years ago – some weird stuff happens and then a distorted face flies real quick at your screen. 

DaFuq!?Boom! has stated that he was literally inspired by toilet-related nightmares, so the surreality and sense of panic at the outset make a lot of sense. But as the plot develops, Skibidi Toilet starts taking influence from a wider variety of genres, especially horror subgenres.

One of these is found footage. We’ve touched on the cameraheads and their diegetic filming already – we also see alterations to the footage, like a cameraman falls and the footage goes wavery for a second, or a camerahead is hit by a beam weapon and the footage distorts. 

Horror that pretends (at some level) to be reality is not new – how many ghost stories are intentionally told as “no, my cousin’s friend’s friend said this really happened to her”? Dracula in 1897 and The Phantom of the Opera in 1910 are both framed as letters and diaries and news reports. 

Skibidi Toilet is obviously not going full Blair Witch Project or War of the Worlds in terms of trying to convince us the story is real, but just in the footage, the full commitment to the bit that all of this is being witnessed by a person(-thing) really adds intrigue and serious sophistication. The shot will end when the POV camerahead either chooses to end the shot, or when it dies. It builds tension by default. I think there’s maybe one moment in the whole series when the filming camerahead dies mid-episode and we are swapped without context to another camerahead. Everything else flows.

How any of this footage gets to us, relatedly, is unclear. It’s not so found-footage as to say “here are the tapes I found in a box in the woods” or “we now present footage from the Joint War Archive, documenting our shared dark history prior to the Toilet-AV Peace Treaty of 2065.” (But that’s pretty good – hey, DaFuq!?Boom!, if you’re reading this, feel free to use that.) But I like to imagine that a peak virtue among AV society is the act of witnessing, and that having and curating this footage of dark moments is good to them. That might explain why so many of them wade into battle, why there’s always someone watching from a good spot, why so many of them stay under fire until the last moment.

There are also underground institutional labs that strike me as borrowed from horror – your Half Lifes, your Resident Evils, your Stranger Things, your SCP Foundations. (Given that Skibidi Toilet borrows other assets from Half Life, it’s kind of the obvious thing to go for.) We see surprisingly little combination between these laboratories and the technological arms race, although I think it’s implied that many new developments come out of these labs. These environments connect more to the post-apocalyptic elements of the series and the vestiges of humanity and the possible origin of the Skibidi Toilets and the AV Army both – although any real answers remain beyond me, if they exist at all.

The real culture war

I didn’t expect, before starting the series, that the eponymous Skibidi Toilets would be the villains. But the existence and narrative role of the AV Army opens up a very interesting series of questions.

What fraction of the viewers of Skibidi Toilet have ever worked with a TV camera? Or a regular camera, for that matter? Wouldn’t they just do all of that on a phone?

I notice that the AV Army doesn’t have any smartphone-heads – or laptop-heads, for that matter. Even flatscreen-heads are rather thin on the ground. They use an older aesthetic: steely surveillance cameras, CRT televisions, tape video recorders or film cameras. They wear suits. Their theme song – only heard a few times, possibly because of Youtube copyright strikes, but distinct – is an echoey version of 80s hit Everybody Wants to Rule the World

Their enemies are, of course, the toilets: frightening, gross, offensive, always lunging at the viewer, always singing their song that has certainly become repetitive by the 20th time (and you will not escape Skibidi Toilet having heard the Skibidi Toilet song only 20 times.)

Even Source Filmmaker is a millennial’s animation tool. DaFuq!?Boom! isn’t a babe in arms, he has years of machinima experience.

People drag Skibidi Toilet as trash, as brainrot, as the meaningless poison of the youth du jour. Do they see the war? The uncouth screaming toilets versus the cool suits of the older generation? I have no idea how intentional this was, but it just sits with me.

A friend, who is much closer to the usual Skibidi Toilet viewing age than I am, described that the cameraheads evoked a sense of omnipresent surveillance that rang true to his life. I suppose it’s true of all of us, even if the older generations are less aware of it. Everybody has a camera on them at all times. Everybody has a screen on them at all times. The AV Army may be our heroes but they’re also literally a surveillance state. We watch through the eyes of the smallest and weakest among them as they die repeatedly. 

I don’t know. I just think it’s an interesting angle on the show, intentional or not.

A glorious collage

DaFuq!?Boom!’s earlier Youtube work includes other popular machinima skits and series, as well as SFX masterpieces like “Optimus Prime Crushed in Hydraulic Press” and “Optimus Prime Explodes in Microwave”. He’s clearly a talented 3D animator. 

There’s one predecessor series, the DaFuq series, which feels to me like the real precursor for Skibidi Toilet. This series involves clips of regular scenes – people shopping, walking in a park, etc – until every model suddenly distorts, and there are screams as they’re rearranged into a surreal hybrid tableau. 

This feels like the invocation of a thing that I’m sure machinima artists have done since the beginning – just played with the models, used them as toys, as sandboxes, made monstrosities just for the hell of it while learning the tools. DaFuq!?Boom! renders these dollhouse abominations as growing from realistic scenes, thus turning them into surreal horror-comedy. I am absolutely certain this is what Skibidi Toilet grew out of.

There’s a genre of media on the internet where the creator clearly didn’t intend for a goofy new project to grow into an epic, but it did. Griffin Mcelroy recorded The Adventure Zone, a game of Dungeons and Dragons with his brothers and father, as a podcast, which they had intended as an easy interlude to their regular podcast while one family member was on paternity leave. But instead the game spiraled out for months, developing real characterization, narratives, a universe-bending arc, and it became a beloved franchise now adapted as a comic book. He described the unexpected whirlwind as “a car that learned to fly.” 

Now, I’m sure that novelists have been starting what they think is going to be a short story and what spirals into, I don’t know, Moby Dick, or The Bible, since the beginning of time. But crucially, in novels, once you figure out it’s going to be a big deal, you can go back and rewrite the beginning to fit with the quality and scope of your vision. 

But barely-planned epic serial media, which the internet is rife with, doesn’t let you do that. The beginning is already out there.

This means:

A) If the authors improve over time, the beginning will still be rough. You can watch Skibidi Toilet grow. Literally: in episode duration and in physical size (it started as a series of youtube shorts and thus the first few dozen episodes are in the upright-phone-screen aspect ratio, but past episode 38 all videos are full-screen.) Figuratively: in animation and visual quality, in coherence, there’s a plot, there’s characters, etc.

B) Relatedly, the authors are stuck with whatever stupid gags they started out with. They’re stuck with wizards named Taco, with teenagers obsessed with Nicholas Cage, with Minecraft nations named “L’manberg” because they didn’t have any women and they wanted to sound European, with toilets with human heads sticking out of the bowls that you can kill by flushing them.

And it is so, so beautiful. To wax philosophic for a moment, I don’t think you’ve truly appreciated art until you’ve been swayed to your very soul by the inner turmoil of Taako the Wizard or the sad little pixels of a Minecraft face or the fact that the Nicholas Cage teen stopped liking Nicholas Cage or the camera-headed guys giving each other thumbs-up after flushing toilet-men – by something so dumb it’s embarrassing. Yes, it’s stupid. It’s so very, very stupid. A novice home-cooked meal or an inadvisable crush or an inside joke can also be stupid. They can also be everything. 

Past the veil of shame is where the dark, gross, raw workings of the heart lie. Meet me there.


Anyway, another interesting thing about Skibidi Toilet is that almost all of its assets are recycled from elsewhere.

Take the AV army. All of the models are other people’s – suited figures and AV equipment. DaFuq!?Boom! cites the creators in his video description. TVheads are a surprisingly common modern internet chimera. They’re not especially common characters in any particular piece of media, but look it up and you’ll find people cosplaying and making art of TVheads. They might have stemmed from people inspired by the 2000 character Canti, a robot with a TV-like screen for a head in the anime FLCL. But the modern suited TVhead is now a fully separate species of cryptid. Yoink!

Probably the earliest camera-headed character appeared in a series of frankly awesome 2007 Japanese PSAs against movie theater piracy, in which dancing, suited, camera-headed people(?) dance and illegally film movies. Oops! Culture has been changed forever!

Interestingly, the diagetic camerahead – a human with supernatural camera head or features who films relevant parts of the series – also plays a minor but impressive role in a legendary 2010-2019 slenderman youtube series and alternate reality game. In EverymanHYBRID, the supernatural villain character (uh, the one who’s not slenderman), the one who’s been hijacking the main team’s youtube channel, also begins hijacking human victims and using them as living video cameras. We never see a camerahead in EverymanHYBRID – it’s a live-action series on a shoestring budget that plays hard for realism – but we do see their camerawork, and we see the main cast react with horror to the thing shooting the picture. It directly asks the question “who’s behind the camera” with a horror flavor, which is of great thematic interest in EverymanHYBRID and which I was surprised to see echoed in Skibidi Toilet

(I have no reason to think DaFuq!?Boom! has watched EverymanHYBRID, but it’s a very interesting parallel.)

In the first version of this review, I wrote that speakerheads don’t have much in the way of cultural context, but how could I forget Sirenhead? This creepy monster invented by artist Trevor  Henderson is a slenderman-esque figure with multiple gaping fleshy megaphone heads, that like the cameraheads, was appropriated by the internet as a folk villain. 

Skibidi Toilet’s speakerheads are the domesticated version – they’re just suited humanoids with speaker clusters for heads, in and among the TV heads and cameraheads. The speakerhead titans in Skibidi Toilet are major characters, apparently developing out of the AV Army’s experiments with sound-based energy weapons. 

These more human speakerheads, and the idea of cameraheads and TVheads and speakerheads all forming a natural alliance based on shared structure? I think that’s all pure innovation on DaFuq!?Boom!’s part.

Even the Skibidi Toilet song is yoinked! It’s a remix by tiktokker doombreaker03, of the songs “Dom Dom Yes Yes” by Biser King and “Give It To Me” by Timbaland. 

(By the way, Biser King is Bulgarian and Timbaland is American, and the remixed song appears to have become viral in Turkey before being used as a video soundtrack by American Tiktokker, Paryss Bryanne, which in turn inspired Skibidi Toilet creator DaFuq!?Boom!, who is Georgian (as in country of Georgia) – thus making an unusual international journey even before reaching the world’s ears as THE Skibidi Toilet song.)

My early interest in tech and tech culture came out of the open source movement, and I have an admittedly rosy-eyed optimism around things like creative commons and free cultural exchange. The machinima community follows this spirit 100%: adapt what you want, build something new, share it around. While I’d never thought about it before, Tiktok culture loves to do this. And Skibidi Toilet rejoices in it too – it is an exquisite collage of borrowed characters, models, songs, and effects all repurposed in creative new ways. It’s a hit kid’s show that’s absolutely unbeholden to any studio or copyright law or content standard other than the bare minimum enforced by youtube. It’s a car that learned to fly. And it’s glorious, and it’s clever, and most importantly, it’s an absolute trip.

The late game

I will say that over time, along with more beautiful atmospheric animations and longer episode lengths, the series Marvelfies. It’s easy to see why – from very early on, it was about escalating fights and drama. So why not scale it to its extreme: huge clashes between titans, dramatic soundtracks and panning action shots. Get some revelations and some shadowy underground bosses and some generic one-liners in there too. Why not?

I personally draw the line at the one-liners – it’s so surprising to hear speech in Skibidi Toilet that I feel it should be conserved or avoided entirely. But as of the most recent episodes, the plot is so convoluted that it’s now necessary to verbally explain a bare minimum of what’s going on. 

(…Okay, when I say it like that, that’s actually a really high bar that basically no other story meets. Fair enough, Mr. Boom.) 

And the series loses some creativity on the way, I think – not all of it, but it has clearly turned from a post-apocalyptic psychological horror franchise with war elements into an action franchise, and I preferred the genre mixing pot.

One notable plot point that I have mixed feelings about (and if this is partially due to the fact that I was four drinks in at this point when I first saw it and completely missed what was going on, it’s surely impossible to know) – is that a force of alien Space Toilets arrive. They have their own space-age technology and aesthetics – red lights, drone-like hover capacity, fancy shields, the works. At first, they seem to be allied with the Skibidi Toilets, as one might expect; however, the alliance fractures. As of now, the Skibidi Toilets have now teamed up with the AV Army against the powerful alien forces. 

And, like, I guess? It’s very Watchmen. It feels like aw, okay, sure, now you have fans of both sides and lines of action figures sold at Target, they have to team up as heroes against a convenient new enemy. Sure. Yes, obviously I bought one.

I’d be more invested in the team-up plotline if we saw either more or less of whatever humanity the Skibidi Toilets have – while we’ve seen lots of humanizing interactions between AV Army members, even the rudiments of Skibidi Civilization are mysterious to us. On the other hand, being forced to cooperate with a nightmarish creepypasta jumpscare entity that has at most a semblance of relatability would be very interesting too. Either way, we have, alas, seen very little of the timbre of the AV Army-Toilet alliance.

More interesting is the side plot in which human beings have appeared – survivors, apparently, people who have been holed up since the fall of their world, their presence further suggesting that the entire series has taken place on some post-catastrophe Earth. They’re with the alliance too, and they’re weak and underpowered in this new paradigm. 

Mostly the series has drifted away from surreal comedy-horror and into solely epic action scenes, with occasional difficult-to-parse intrigue. A return to form would not be amiss. But it still has a lot of heart in it, a frankly wild amount of implicit worldbuilding, and as a visual spectacle it’s only growing over time. I, personally, am curious to see if the AV-Toilet alliance holds, and if the human survivors will find any place in the world to come.

I hope we all find a place in the world to come.

Final rating

5/10. I have no idea how this was monetized and I hope the creator makes ten million dollars off it. If you’re going to watch the whole thing at once, I recommend being drunk. 



This review was written as an entry for Astral Codex Ten‘s 2025 “Anything-But-A-Book Review” contest – it didn’t make the finalists, but watch for those on ACX in the coming days.

Thank you Nova for suggesting the title of this post.

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Crossposted to: [EukaryoteWritesBlog.comSubstack]

Book review: Air-borne by Carl Zimmer

Remember early 2020 and reading news articles and respected sources (the WHO, the CDC, the US surgeon general…) confidently asserting that covid wasn’t airborne and that wearing masks wouldn’t stop you from catching it?

Man, it’s embarrassing to be part of a field of study (biosecurity, in this case) that had such a public moment of unambiguously whiffing it.

a framed relic - an internet archive screenshot of a World Health Organization graphic saying, among other things, "Masks are effective only when used in combination with frequent hand-cleaning" - and a tweet from the US Surgeon General saying "Seriously people- STOP BUYING MASKS! They are NOT effective in preventing general public from catching #Coronavirus." This framed relic is captioned "Whoops" - early 2020.

I mean, like, on behalf of the field. I’m not actually personally representative of all of biosecurity.

I did finally grudgingly reread my own contribution to the discourse, my March 2020 “hey guys, take Covid seriously” post, because I vaguely remembered that I’d tried to equivocate around face masks and that was really embarrassing – why the hell would masks not help? But upon rereading, mostly I had written about masks being good.

The worst thing I wrote was that I was “confused” about the reported takes on masking – yeah, who wasn’t! People were saying some confusing things about masking.

I mean, to be clear, a lot of what went wrong during covid wasn’t immediately because biosecurity people were wrong: biosecurity experts had been advocating for years for a lot of things that would have helped the covid response (recognition that bad diseases were coming, need for faster approval tracks for pandemic-response countermeasures, need for more surveillance…) And within a couple months, the WHO and the Surgeon General and every other legitimate organization was like “oh wait we were wrong, masks are actually awesome,” which is great.

Also, a lot went right – a social distancing campaign, developing and mass-distributing a vaccine faster than any previous vaccine in history – but we really, truly dropped the ball on realizing that COVID was airborne.

In his new book Air-borne: The hidden history of the air we breathe, science journalist Carl Zimmer does not beat around this point. He discusses the failure of the scientific community and how we got there in careful heartbreaking detail. There’s also a lot I didn’t know about the history of this idea, of diseases transmitting on long distances via the air, and I will share some of it with you now.


Throughout human history, there has been, of course, a great deal about confusion and debate about where infectious diseases came from and how they were spread, both before and to some extent after Louis Pasteur and Robert Koch et al illuminated the nature of germ theory. Germ theory and miasma theory were both beloved titans. Even after Pasteur and Koch had published experiments, the old order, as you may imagine, did not go quietly; there were in fact series of public debates and challenges with prizes and winners that pitted e.g. Pasteur up against old standouts of miasma theory.

One of the reasons that airborne transmission faced the pushback it did is that it was seen as a waffley compromise of a return to miasma theory. What, like both a germ and the air could work together to transmit a disease? Yeah, sure.

Airborne transmission was studied extensively in the 1950s. It eventually became common knowledge that tuberculosis was airborne. That other diseases, like colds and flu and measles, could be airborne, was the subject of intense research by William and Mildred Wells, whose vast body of work included not only proving airborne transmission but experimenting with germ-killing UV lights in schools and hospitals — and who remain virtually unknown to this day.

Let us acknowledge a distinction often made between droplet-borne diseases, where heavy wet particles might fly from a sneeze or cough for some six feet or so, to airborne diseases, which might travel across a room, across a building, wafting about in the air for hours, et cetera. This distinction is regularly stressed in the medical field although it seems to be an artificial dichotomy – spewed particles seem to be on a spectrum of size and the smaller ones fly farther, eventually becoming so small they’re much more susceptible to vagaries in air currents than to gravity’s downward pull. Droplet-borne diseases have been accepted for a long time, but airborne diseases were thought by the modern medical establishment to be very rare.

(I forget if Zimmer makes this point, but it’s also easy to imagine how it’d be easier for researchers to notice shorter-distance droplet-borne transmission – the odds a person comes down with a disease relates directly to how many disease particles they’re exposed to, and if you’re standing two feet away from a coughing person, you’ll be exposed to more of the droplets from that blast than if you’re ten feet away. Does that make sense? Here’s a diagram.)

A drawing of two stick figures standing in a cone of purple mist being fired from a spray can. The figure further out in the spray looks at their arm and says "Hmm, I'm slightly more purple than I'd prefer to be". The figure closer to the nozzle, being hit more intensely by the direct blast of purple, screams "AAAAAAAAAAAAAAAA".
Aerosols disperse from their source over distances.

(But that doesn’t mean that ten-foot transmission will never happen. Just that it’s less likely.)

Why didn’t the Wells’ work catch on? Well, it was controversial (see the ‘return to miasma’ point above’), and also, they were just unpleasant and difficult to work with. They were offputting and argumentative. Also Mildred Wells was clearly the research powerhouse and people didn’t want to hire just her, for some reason.* Their colleagues largely didn’t want to hire and fund them or to publish their work. We have a cultural concept of lone genius researchers, but these are, in terms of their impact, often fictional – science is a broadly collaborative affair.

The contrast in e.g. Koch and Pasteur’s status vs. William and Mildred Wells made me think about the nature of scientific fame. I wonder if most generally-famous scientists were famous in their lifetimes too. Koch and Pasteur were. Maybe most famous scientists are also famous because they’re also good science communicators. I’m sure that also interplays with getting your ideas out into the world – if you can write a great journal article that sounds like what you did is a big deal, more people will read it and treat it like a big deal.

The Wells were not a big deal, not in their day nor after. Their work, studying disease and droplet transmission and the possibility of UV lamps for reducing disease transmission (include putting lamps up in hospitals and schools), struggled to find publication and has only recently been unearthed as a matter of serious study.

Far UV lamps are the hot new thing in pandemic and disease response these days. Everyone is talking about them.

There’s variations and nuance, but the usual idea works like this: you put lamps that emit germ-killing UVC light up in indoor spaces where people spend a lot of time. UVC light can causes skin cancer (albeit less than its higher-energy cousin, UVB). But you can just put the lamps in ventilation systems or aimed up at the ceilings, where they don’t point at people or skin but instead kill microbes in the air that wafts by them. Combined with ventilation, you can sterilize a lot of air this way.

William and Mildred Wells found results somewhere in between “positive” and “equivocal” – the affect being stronger when people spent more of their day under the lamps, e.g., pretty good in hospital wards and weaker in schools.

They’re not too expensive and could be pretty helpful, especially if they became de facto in places where people spend a lot of time – and especially in hospitals. Interest in this is increasing but there’s not much in the way of requirements or incentives for any such thing yet.

*Sexism. Obviously the reason is sexism.


The other heroes of the book are the Skagit Valley Chorale. In March 2020 a single Skagit Valley Chorale choir rehearsal transmitted multiple fatal covid cases during a single choir practice. Afterwards, the survivors worked with researchers, who figured out where everyone was standing, where points of contact were, did interviews and mapping and figured that there had been no coughing or sneezing, that the disease had in fact been flung at great distances just by singing – that it was really airborne. (There were other studies in other places indicating the same thing.) But this specific work of contact tracing was a focus and was instrumental and influential, and cooperation between academic researchers and these grieving choir members formed an early, distinct piece of evidence that covid was indeed airborne.

I think being part of research like this – an experimental group, opting into a study – is noble. It’s selfless, and what a heroic and beautiful thing to do with your grief and your suffering, to say: “Learn everything you can from this. Let what happened here be a piece in the answer to it not happening again.”

(Yeah, I got dysentery for research, but listen, nobody in the Skagit Valley Chorale got $4000 for their contributions. They just did it for love. That’s noble.)


There was also a cool thread of the story that involved microbiologists like Fred Meier and their interactions with the early age of aviation – working with Lindbergh and Earhart and balloons and the earliest days of commercial aviation to strap instruments to their crafts and try to capture microbes whizzing by.

And they found them – bacteria, pollen, spores, diseases, algaes, visitors and travellers and tiny creatures that may have lived up their all their lives. Another vast arm of the invisible world of microbes.


I’ve been interested in the mechanics of disease transmission for almost as long as I’ve been interested in disease. In freshman year in college I tried an ambitious if bungled study on cold and flu transmission in campus dorms. (That could have been really cool if I’d known more about epidemiological methods or at least been more creative about interpreting the data, I think. Institutions are famously one of the easier places to study infectious diseases. Alas.) Years later I tried estimating cold and flu transmission in more of an EA QALY/quantifying-lost-work days sense and really slammed into the paucity of transmission studies. And then covid came, and covid is covid – we probably got the best data anyone has ever gotten on transmission of an airborne/dropletborne disease.

More recently, I’ve been doing some interesting research into rates and odds of STD transmission, and there’s a lot more there: there’s a lot of interest and money in STD prevention, and moreover, stigmatized as they are, it’s comparatively easy to determine when certain diseases were caught. They transmit during specific memorable occasions, let’s put it like that.

For common air- or droplet-borne diseases? Actual data is thin on the ground.


I think this is one of the hard things about science, and about reasoning in and out of invisible, abstract worlds – math, statistics, physics at the level of atoms, biology at the level of cells, ecology at the level of populations, et cetera. You know some things about the world without science, like, you don’t need to read a peer-reviewed paper to know that you don’t want to touch puke, and you don’t need to consult with experts in order to cook pasta. The state of ambient knowledge around you takes care of such things.

And then there’s science, and science can tell you a lot of things: like, a virus is made of tiny tiny bricks made of mucus, and your body contains different tiny virus detectors (also themselves made of mucus), and we can find out exactly which mucus-bricks of the virus trigger the mucus-detectors in your body, and then we can like play legos with those bricks and take them off and attach them to other stuff. We know about dinosaurs and planets orbiting other stars.

And science obviously knows and tells us some useful stuff that interacts with our tangible everyday world of things: like, you can graft a pear tree onto a quince tree because they’re related. A barometer lets you predict when it’s going to rain. You can’t let raw meat sit around at room temperature or you might get a disease that makes you very sick. Antibiotics cure infections and radios, like, work.

And then there’s some stuff that’s so clearly at this intersection that you might assume it’s in this domain of science. Like, we know how extremely common diseases transmit, right? Right?

It used to blow my mind that we know enough about blood types to do blood transfusions and yet can’t predict the weather accurately. Now it makes visceral sense to me, because human blood mostly falls into four types relevant to transfusions, and there are about ten million factors that influence the weather. (Including bacteria.)

Disease transmission is a little bit like predicting the weather, because human bodies and environments are huge complicated machines, but also not as complicated, because the answer is knowable – like, you could do tests with a bunch of human subjects and come up with some reasonable odds. We just… haven’t.


Actually, let’s unpack this slightly, because I think it’s easy to assume that airborne (or dropletborne) disease transmission would be dirt cheap and very easy to study experimentally.

To study disease transmission experimentally, you need to consider three things (beyond just finding people willing to get sick):

First, a source of infection. If you’re trying to study a natural route of infection like someone coughing near you, you can’t just stick people with a needle that has the disease – you need a sick person to be coughing. For multiple reasons, studies rarely infect a person on purpose with a disease, let alone two groups of people via different routes (the infection source and the people becoming infected) – you might need to find a volunteer naturally sick with the disease to be Patient Zero.

Second, exposure. People are exposed to all sorts of air all the time. If you go about your everyday life and catch a cold, it’s really hard to know where you got the cold from. You might have a good guess, like if your partner has a cold you can make a solid statistical argument about where you were exposed to the most cold germs – or you might have a suspicion, like someone behind you on the bus coughing – but mostly, you don’t know. A person in a city might be exposed to the germs of hundreds on a daily basis. In a laboratory, you can control for this by keeping people isolated in rooms with individually-filtered air supplies and limited contact with other people.

Third, when a person is exposed to an infectious disease, it takes time to learn if they caught it or not. The organism might get fought off quickly by the body’s defenses. Or the organism might find a safe patch of tissue to nestle in and grow and replicate – the incubation period of the infection. It’ll take time before they show symptoms. Using techniques like detecting the pathogen itself, or detecting an immune response to the pathogen, might shave off time, but not a lot, you still have to wait for the pathogen to build up to a detectable level or for the immune response to kick in. Depending on the disease, they also may have caught a silent asymptomatic infection, which researchers only stand a chance of noticing if they’re testing for the presence of the pathogen (which depending on the pathogen and the tests available for it, might entail an oral or nasal swab, a blood test, feces test…)

So combine these things – you want to test a simple question, like “if Person A who is sick with Disease X coughs ten feet away from Person B, how likely is Person B to get sick?” The absolute best way to get clean and ethically pure data on this is to find a consenting Person A who is sick with the flu, find a consenting Person B (ideally who you are certain is not already sick, perhaps by keeping them in an isolated room with filtered air beforehand for the length of the incubation period), have Person A stand ten feet away and cough, and then sweep Person B into an isolated room with filtered air for the entire plausible incubation period, and then see if they get sick, and then have this sick person cared for until they are no longer infectious.

And then repeat that with as many Persons B as it takes to get good data – and it might be that only, like, 1% of Persons B get sick from a single sick person coughing 10 feet away from them. So then you need, I don’t know, 1000 Persons B at least to get any decent data.

It’s not impossible. It’s completely doable. I merely lay this out so that you can see that producing these kinds of basic numbers about disease transmission would instantly entail a lot more expense and human volunteers than you might think.

A friend of mine did human challenge trials studying flu transmission, and they did it similarly to this – removing the initial waiting period (which is fair, most people are not incubating the flu at any given moment) and with more intense exposure events, with multiple Persons B in a room actively chatting and passing objects around with a single Person A for an hour, and then sending Persons B to a series of hotel rooms for a few days to see if anyone got sick.

(What about going a step further: just having Person A and Persons B in a room, Person A coughs, and then send Persons B home and call them a few days later to ask about symptoms? You could compare this to a baseline of Persons C who were not in a room with a Person A coughing (“C” for “control”). Well, I think this would get you valid and usable numbers, but exposing people to infectious diseases that could then be freely passed on to nonconsenting strangers is considered a “bioethics no-no” – and so researchers have, to my knowledge, mostly not tried this.)

(Maybe someone did that in the sixties. That seems like something they’d have done back then.)

The point is, it’s like, expensive and medium hard to study airborne disease transmission experimentally. Adjust your judgment accordingly.


Anyway, fascinating book about the history of the history of that which you think might be better understood by virtue of being a life-and-death matter millennia old, but which is, alas, not.

Here are some questions I was left with at the end of the book:

  • What influences whether pathogens are airborne-transmissible? Does any virus or spore coughed up from the lungs have about the same chance of becoming airborne, or do other properties of the microbe play a role? (I was hoping the book would explain this to me, but I think the research here may not exist.)
  • Zimmer is clearly pro-far-UV but the Wells’ findings on far UV lamps in schools was in fact pretty equivocal – do we have reason to think current far UV would fare better? (I know I linked a bunch of write-ups but I’m not actually caught up on the state of the research.)
  • Some microbes travel for long distances, hundreds of miles or months, while airborne. Often high in the earth’s atmosphere. How are these microbes not all obliterated by solar UV?

Find and read Air-borne by Carl Zimmer.


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An arrow over the DC skyline, indicating AWAY. The faint arc of a rainbow overlays it.

Eukaryote Skips Town – why I’m leaving DC

I’ve spent the past 7 years living in the DC area. I moved out there from the Pacific Northwest to go to grad school – I got my masters in Biodefense from George Mason University, and then I stuck around, trying to move into the political/governance sphere. That sort of happened. But I will now be sort of doing that from rural California rather than DC, and I’ll be looking for something else – maybe something more unusual – do to next.

A friend asked if this means I’m leaving biosecurity behind. No, I’m not, but only to the degree that I was ever actually in biosecurity in the first place. For the past few years I’ve been doing a variety of contracting and research and writing jobs, many of which were biosecurity related, many of which were not. Many of these projects, to be clear, were incredibly cool and interesting, and I’m honored to have been able to be part of them, and hopefully to do more of them in the future.

But when I moved to DC, I was kind of hoping to start a capitol-capital-C Career in biosecurity: in something having to do with policy and governance of emerging technology. This Career, which surely would include 9-5 hours, health insurance, a 401(k), an office with beige carpeting, and maybe a security clearance and wearing a suit all day, well, uh – it never happened.

I tried. But maybe I didn’t try hard enough, or I don’t have the temperament for it, or I faced Structural Oppression, or some combination of the above. I don’t know. So I got by in other ways and kept trying to get a foot in there, for a long time.

Maybe longer than I should have spent. I’m an optimist. But 3 things have happened:

  1. True love called.
  2. The administration switched out.
  3. I think very intelligent AI might dramatically change the world very soon.

True love, and its invitation to move to California, speaks for itself. (Mine says things like “if you put a laboratory-style shaker machine in the oven, you wouldn’t have to stir the onions every five minutes for half an hour”, and then we discuss the logistics of this for an hour, and it’s great. Did you know they make shaking autoclaves? I didn’t until yesterday.)

The administration – hoo boy. So I’m not permanently writing off a biosecurity capital-C Career, personally. But I’m kind of guessing that over the next 4 years, the kind of jobs I’d been looking for – junior analyst or research positions in thinktanks or nonprofits or federal agencies – are going to be either flush with great well-qualified candidates looking desperately for new work, or nonexistent. RFK? Fucking RFK in HHS? What the fuck were they thinking? Christ.

Strong AI is a discussion this margin is too narrow to contain. I might be totally wrong about this. It would be my dream to write a “how I got caught up in the AGI x-risk hype even though everything turned out fine” essay 20 years from now. Hell, I’ll write a book. But a lot of very smart people are saying things might get weird very soon, and I can’t pretend that “enjoying the old world order while it lasts” isn’t a factor.


I went into biosecurity for utilitarian reasons, influenced by the effective altruism movement. And frankly, despite recent PR hits, I’m still completely on board with all of that. I’m hesitant to write this piece because it’s directly about my EA ambitions, and I’ve talked to a lot of EAs trying to get into biosecurity who want advice, and I have no idea what they should take away from my story or if any of this should be taken as any kind of advice.

I mean, public health in the US, as a political endeavor, is currently being broken into pieces with big hammers. The next four years aren’t a great time to move into biosecurity. But four years will pass and someone knowledgeable might be able to fix it later, right? Or if avian flu spills over into humans and it’s even fractionally as deadly as feared, maybe the political will to fight diseases will return. I don’t know.

And I’m also hesitant to give advice because I’m a sample size of 1 who clearly doesn’t know what went wrong. I really could have tried harder, and I legitimately feel like someone who’s a lot like me but 5% more ambitious or 5% less depressed, or even just 5% luckier, might have been able to make it work! A lot of people I know, who are weird and into effective altruism and depressed and more, have been able to make it work!

(If you’re still here because you want career advice, I tentatively wave you towards “Want to make a difference on policy and governance? Become an expert in something specific and boring“. Otherwise, this post of mine isn’t really going to help you.)

A friend who I’ve had some professional interaction with came to my going-away party. Late into the evening and a little whiskey-warmed, they mentioned that they thought that my aspiring political career had stalled out because I didn’t do a good job of presenting myself as a serious professional, that I spent my weirdness points on things like “being a little awkward” and “being gender-nonconforming”.

I don’t know how right my friend is. I thought this was an interesting take. It’s not like it hasn’t crossed my mind.

At first glance, the notion fills me with a righteous fury – like, if the only way I could make public health better was by fulfilling my socially-condoned sex role like a good girl, maybe public health can suck it!

But public health is measured in lives, so I don’t actually believe that. If you told me right now that I could with 100% certainty swing the ideal biosecurity career if I just femmed it up in the workplace, I’d do it. It’s worth it, because it’s the entire goddamn future of humanity, or at the very least, some of humanity.

But I guess my model of classic DC early-career presentability, at a very basic level, still goes like this:


“Pros”“Cons”
MinorGood rapport with interviewer
Makes people feel good about themselves
etc…
Not a sports fan
Poorly formatted resume
etc…
MediumGood communication
Knowledgeable
etc…
Gender-nonconforming (female)
A little awkward
etc…
MajorHistory of good projects
Fancy credentials
Rare technical skills
Buds with people on the team
etc…
Very awkward
Unpleasant to be around
Trans, gender-nonconforming (male)
Unignorably physically disabled
etc…

And you can have cons if you have enough pros to (in an employer’s eyes) outweigh them. This is, again, just a tailored version of weirdness points / idiosyncrasy credits. I guess I was hoping for employers who would be chill about the arbitrary and stupid cons, and/or that I’d be good enough at my work that the cons were outweighed by the pros.

Nobody ever gave me this advice unprompted, so maybe that’s something I can say – you will not necessarily know for sure.

But I had opportunities to ask, also – professors and DC-oriented college career advisors and colleagues and friends – ask them what kind of impression I was making, what was holding me back. And I didn’t, not really. That’s on me. It could have been any number of things. Doing more interview practice. Sending more cold emails. Not using “Times Sans Serif” in my resume even though it’s a great font.

Now, in my defense: Even if I had asked them, any individual of them might not have a good understanding of what was happening (for instance, I was often the only gender-nonconforming person in a workspace or classroom – does a much older professor, who thinks of themself as accepting person, really know how much of a ding that is?) – so I’d have to ask a lot of people. Some causes are more tractable than others, like, I know roughly how to change “visibly queer” but not how to fix “awkward”. And all that sounds really unpleasant, especially since it’d be taking a lot of mental energy I could use to be better at the work instead.

Also, while we’re being honest here: can you imagine if you force-femmed yourself for five years to improve your career chances, and then your career still didn’t pan out? It’d be humiliating! I don’t know that my ego could stand it.

(If you’d be into that, then imagine pretending to be a proud card-carrying ideologue of a political party you hate. It’s that kind of feeling.)

So, I’m out. Fuck that, fuck this, I’m off, I’m out, this eukaryote is heading west. I can do something useful somewhere else! If not, I can do something somewhere else!

Somewhere I can look at mountains.


Also, while I’m drawing my little lines in the sand: I’m bisexual, asexual1, polyamorous, and gender non-conforming. None of this will come as a surprise to anyone I’ve known well in the last few years, but I’ve avoided saying these hyper-publicly so far because of that silver specter of maximizing career capital. What if someone looks back at my work? Surely I’ll want to be maximally unobjectionable?

But now I’m laying that ghost in its grave. I’m upset at a political tide that sees these as frivolous luxuries or imagined deviations from a true universal way of life or worse, when they have led to some of the best things in my life and I feel more myself than ever – and like, just when society was getting good about them too! Fuck hatred, fuck fear, fuck indifference, and to that end, fuck closets. I am who I am, a person whose preferences are a little weird and a little hard to explain but ultimately harmless, and no amount of haranguing over the Woke Left will change that.

I also have depression and ADHD. I felt weird about putting them in the same category as the queer stuff because, frankly, they’re more clearly negatives. However, consider:

  1. Hiring bias against people with disabilities continues to be hella illegal
  2. People don’t talk about them enough and the political winds blowing toward these things is astonishingly bad
  3. I’m the one getting the worst of my brain, not anyone else, and the facts will be true whether or not I say them out loud, so let’s say them out loud.

Hey guys? Depression sucks so bad! I don’t even have a severe case but the degree to which it drags down your entire quality of life is vast and insidious. If you know what it’s like, you know, and please be compassionate to yourself; if you don’t, please be compassionate to those around you.


Okay, now that we’ve gotten that out:

For better or worse, be it bravery or stupidity, I find it very hard to be someone other than who I am. I will continue to do what I love, which includes reading and writing and thinking about biosecurity and diseases and animals and the end of the world and all that, and I will scrape out my existence one way or another. I hope to write more often. Thanks for joining me, and I hope you’ll stay tuned.

An arrow over the DC skyline, indicating AWAY. The faint arc of a rainbow overlays it.

(Also, if you want to rent a room in Arlington VA, hit me up.)

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Crossposted to: [EukaryoteWritesBlog.com SubstackLessWrongEffective Altruism Forum]

  1. “How are you both bisexual and asexual?” Okay, I’m biromantic and asexual. I usually say “bisexual” because more people have heard of that one. This is the one terminology quibble you get with me. Hope it was all you wanted and more! ↩︎
A trippy kaleidescope-type image of a scientist writing something down.

Learn to write well BEFORE you have something worth saying

I’ve been reading a lot of trip reports lately. Trip reports are accounts people write about their experiences doing drugs, for the benefit of other people who might do those same drugs. I don’t take illegal drugs myself, but I like learning about other people’s intense experiences, and trip reports are little peeks into the extremes of human consciousness. 

In some of these, people are really trying to communicate the power and revelation they had on a trip. They’re trying to share what might be the most meaningful experience of their entire life. 

Here’s another thing: almost all trip reports are kind of mediocre writing.

This is wildly judgmental but I stand by it. Here are some common things you see in them:

  • Focusing on details specific to the situation that don’t matter to the reader. (Lengthy accounting of logistics, who the person was with at what time even when they’re not mentioned again, etc.) 
  • Sort of basic descriptions of phenomena and emotions: “I was very scared”. “I couldn’t stop thinking about it.”
  • Cliches: “I was glad to be alive.” “It felt like I was in hell.” “It was an epic struggle.”
  • Insights described in sort of classically-high-sounding abstractions. “I realized that the universe is made of love.” “Everything was nothing and time didn’t exist.” These statements are not explained, even if they clearly still mean a lot to the writer, and do not really communicate the force of whatever was going on there.

It’s not, like, a crime to write a mediocre trip report. It’s not necessarily even a problem. They’re not necessarily trying to convince you of anything. A lot of them are just what it says on the tin: recording some stuff that happened. I can’t criticize these for being bland, because that seems like trying to critique a cookbook for being insufficiently whimsical: they’re just sharing information.

(…Though you can still take that as a personal challenge; “is this the best prose it can be?” For instance, How to Cook and Eat in Chinese by Chao Yang Buwei is a really well-written cookbook with a whimsical-yet-practical style. There’s always room to grow.)

But some of these trip reports very much do have an agenda, like “communicating crucial insights received from machine elves” or “convincing you not to take drug X because it will ruin your life”. In these cases, the goal would be better served if the writing were good, and boy howdy, my friends: the writing is not good.

Which is a little counter-intuitive, right? You’d think these intense and mind-blowing experiences would automatically give you rich psychic grist for sharing with others, but it turns out, no, accounts of the sublime and life-altering can still be astonishingly mid.

Now certain readers may be thinking, not unreasonably, “that’s because drug-induced revelations aren’t real revelations. The drug’s effects makes some thoughts feel important – a trip report can’t explain why a particular ‘realization’ is important, because there’s nothing behind it.”

But you know who has something new and important to say AND knows why it’s important? Academic researchers publishing their latest work.

But alas, academic writing is also, too frequently, not good. 

And if good ideas made for good writing, you’d expect scientific literature to be the prime case for it. Academic scientists are experts: they know why they made all the decisions they did, they know what the steps do, they know why their findings are important. But that’s also not enough.

Ignore academic publishing and the scientific process itself, let’s just look at the writing. It’s very dense, denser than it needs to be. It does not start with simple ideas and build up, it’s practically designed to tax the reader. It’s just boring, it’s not pleasant to read. The rationale behind specific methods or statistical tests aren’t explained. (See The Journal of Actually Well-Written Science by Etienne Fortier-Dubois for more critique of the standard scientific style.) There’s a whole career field of explaining academic studies to laypeople, which is also, famously, often misleading and bad.

This is true for a few reasons:

First, there’s a floor of how “approachable” or “easy” you can make technical topics. A lot of jargon serves useful purposes, and what’s the point in a field of expertise if you can’t assume your reader is caught up on at least the basics? A description of synthesizing alkylated estradiol derivatives, or a study on the genome replication method of a particular virus, is simply very difficult to make layperson-accessible.

Second, academic publishing and the scientific edifice as it currently stands encourage uniformity of many aspects of research output, including style and structure. Some places like Seeds of Science are pushing back on this, but they’re in the minority.

But third, and this is what trips up the trip-reporters and the scientists alike, writing well is hard. Explaining complicated or abstract or powerful ideas is really difficult. Just having the insight isn’t enough – you have to communicate it well, and that is its own, separate skill.

A trippy kaleidescope-type image of a scientist writing something down.

I don’t really believe in esoterica or the innately unexplainable. “One day,” wrote Jack Kerouac, “I will find the right words, and they will be simple.” Better communication is possible. There are great descriptions of being zonked out of one’s gourd and there is great, informative, readable science writing.

So here’s my suggestion: Learn to write well before you have something you really need to tell people about. Practice it on its own. Write early and often. Write a variety of different things and borrow techniques from writing you like. And once you have a message you actually need to share, you’ll actually be able to express it.

(A more thorough discussion of how to actually write well is beyond the scope of this blog post – my point here is just that it’s worth improving. if you’re interested, let me know and I might do a follow-up.)


Thank you Kelardry for reviewing a draft of this post.

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Drawing of the author in scrubs surrounded by a halo of bacteriophages and orbiting beakers, a cup, a paper form, pills, bacillus bacteria, and Infinite Jest.

I got dysentery so you don’t have to

Drawing of the author wearing hospital scrubs surrounded by a halo of bacteriophages and floating beakers, a form, a cup, pills, bacillus bacteria, and a copy of Infinite Jest.

This summer, I participated in a human challenge trial at the University of Maryland. I spent the days just prior to my 30th birthday sick with shigellosis.

What? Why?

Dysentery is an acute disease in which pathogens attack the intestine. It is most often caused by the bacteria Shigella. It spreads via the fecal-oral route. It requires an astonishingly low number of pathogens to make a person sick – so it spreads quickly, especially in bad hygienic conditions or anywhere water can get tainted with feces.

It kills about 70,000 people a year, 30,000 of whom are children under the age of 5. Almost all of these cases and deaths are among very poor people.

The primary mechanism by which dysentery kills people is dehydration. The person loses fluids to diarrhea and for whatever reason (lack of knowledge, energy, water, etc) cannot regain them sufficiently. Shigella bacteria are increasingly resistant to antibiotics. A disease easily treatable by lots of fluids and antibiotics is becoming more lethal.

Can someone do something?

The deal with human challenge trials

Clinical trials in general are expensive to run but pretty common; clinical trials where you are given the disease – “challenged”, AKA “human challenge trials” – are very rare. The regular way to investigate a possible treatment is to make a study plan, then find people who have the disease and offer to enroll them in the experimental treatment. Challenge trials are less common, but often more valuable for research – shigellosis is a fast-acting disease that is imminently treatable by antibiotics and uncommon in the US. It would be very difficult to test an alternative shigellosis treatment in the US in the conventional way, but it’s a great candidate for challenge trials.

I’d signed up for email alerts on upcoming challenge trials at the nearby University of Maryland, and got one about an upcoming study. It caught my eye that it was for a phage-based treatment. Bacteriophages are really promising antibacterial medicines, not to mention what I’d studied as an undergrad.

Here’s the thing: you really only get good medical research out of human subjects. Also, I could use $4000 and this seemed like a cool way to spend a couple weeks and help out medical research. So I signed up, got a check-in general health appointment, and shortly after, was told I was in. I made plans to spend my 30th birthday in a dysentery ward.

Dysentery: it’s a modern disease

Many of you reading this will know about dysentery from the 1971 simulation game The Oregon Trail (or its later versions). The actual Oregon Trail was a network of trails and the corresponding migration of mostly-white pioneers, moving on foot and on ox-drawn wagon from the eastern US to the western US between 1830 and 1869. About 400,000 people* crossed the Oregon Trail in this period, and a lot of them were on similar trails – a bunch of stressed and malnourished people, traveling in close quarters with their families, stopping and pooping near the same trails and creeks with no regard for water safety – diseases spread very fast in these conditions. From these and other stressors, about 65,000 people died in this 40-year period.

Stated another way, more people die from dysentery now, every year than ever died from any cause on the Oregon Trail. So let’s calm down about the Oregon Trail, okay?

*Lots of people use this 400,000 number but I can’t figure out where it came from and if this is referring to individuals or families – I’ve seen sources indicate it was either. If it was families, it was probably counting the men who were “the pioneers” and then being like “oh and there were women and kids there also, I guess.” But maybe it was individuals? Or maybe someone just made this up? Again, no idea where it came from. You gotta be careful every time anyone tells you a number. It’s so bad out there. The only thing worse than someone telling you a number is when they don’t tell you a number.

Getting ready

A week or so before I went, I’d been pointed to Jake Eberts’s twitter thread. Jake Eberts also participated in a challenge trial for a dysentery vaccine, also I think at UMD and the same Baltimore facility I was at, where he got very sick and went viral for livetweeting the experience. He started a fundraiser for dysentery relief and got a lot of people to sign up for clinical trials themselves, and now he works for 1DaySooner, premier “hey, human challenge trials are cool” advocates.

I read his twitter thread and sent my friends this meme:

(chuckles) I'm in danger.

I brought Infinite Jest, which I was partway through and was a lot more through (but still not done) by the time I was discharged. (I’m writing this while traveling, and in a fit of poor timing I finally finished it on the plane ride in, which means I now have a giant brick of a book to carry around in my suitcase.) My friend Ozy said that Infinite Jest was a really good book for reading in a dysentery ward.

I thought, oh, that’s interesting, you know, a lot of the characters are pretty miserable and living in a controlling institution of some kind. Then I remembered this one passage, where circumstances have forced a character into withdrawing from heroin alone, holed up for days in a public bathroom:

Time began to pass with sharp edges. Its passage in the dark or dim-lit stall was like time being carried by a procession of ants, a gleaming red martial column of those militaristic red Southern-U.S. ants that build hideous tall boiling hills, and each vile gleaming ant wanted a minuscule little portion of Poor Tony’s flesh in compensation as it helped bear time slowly forward down the corridor of true Withdrawal. By the second week in the stall time itself seemed the corridor, lightless at either end. After more time time then ceased to move to be moved or be move-throughable and assumed a shape above and apart, a huge, must-feathered, orange-eyed wingless fowl hunched incontinent atop the stall, with a kind of watchful but deeply uncaring personality that didn’t seem keen on Poor Tony Krause as a person at all, or to wish him well. Not one little bit. It spoke to him from atop the stall, the same things, over and over. They were unrepeatable. Nothing in even Poor Tony’s grim life-experience prepared him for the experience of time with a shape and an odor, squatting; and the worsening physical symptoms were a spree at Bonwit’s compared to time’s black assurances that the symptoms were merely hints, signposts pointing up at a larger, far more dire set of Withdrawal phenomena that hung just overhead by a string that unraveled steadily with the passage of time. It would not keep still and would not end; it changed shape and smell.

I was forced to agree that Infinite Jest was indeed probably a pretty good choice.

Two days until challenge

Checking in, everyone’s bags were checked. I got the impression they really didn’t want some kind of bad outcome where they had to call cops into a ward where everyone was running around with the bloody flux, which, fair enough. They did take away my craft scissors. I didn’t end up knitting so it wasn’t a big deal but like I’m pretty sure I’ve taken those on airplanes before. Okay. 

We were assigned a number (I was just on this side of divinity at No. 107), given a plastic wristband, and shown to our rooms. We were also given two pairs of scrubs which were to be our main clothes on the ward – less risk of ruining hard-to-launder clothes in the more messy phases of the study – though it did mean 15 people having to coordinate laundry every day.

My hospital bed with folded scrubs atop, a cup of coffee, and copy of Infinite Jest set on the adjustable bedside table.
Where I made my stand

The ward was more of a retrofitted office building than a hospital. It consisted of some spaces for nurses and testing, about 6 bedrooms of various sizes (each with their own half-bath), two separate areas with two shower stalls each, a “kitchen” with snacks and where the meals were delivered to, a closet with washer and dryer, and a rec room with couches and a TV and a pool and foosball table.

There were about 16 people on the ward, an even mix of men and women. Most of them were Baltimore locals; many of them had done other trials before. We were fully allowed to socialize – dysentery is, again, infectious through the fecal-oral route, hand sanitizer was stationed all over the place but there wasn’t a huge concern that we’d infect each other or even the nurses.

Life on the ward is very chill. I was worried about being bored, but I’d forgotten that I spend most of my waking hours on the computer anyway, so it really wasn’t a problem. When even my iron gaze faltered and couldn’t stare at the computer anymore, I read Infinite Jest.

Meals were delivered once a day – one cold usually wrap- or sandwich-based meal, one hot breakfast, one hot supper dish, labelled with people’s numbers.

Sample lunch: a sandwich, salad, and roll in plastic packaging, plus a bottle of water.
Sample lunch

They were, like, fine. The caterers made a few interesting choices – for vegetarians such as myself, every sandwich/wrap was some veggies with hummus, and now and then there’d be like breakfast pancakes with a curry-flavored veggie hamburger patty. I would describe the flavor when drenched with table syrup as “weird.”

Like, you can tell the person planning that menu was like “okay, pancakes and bacon… And wait, crap, something with protein for the vegetarians.” But again, I’ve eaten worse for things I’ve actually paid for ingredients for, and I was definitely eating better in terms of variety and volume than I did at home. I’m not complaining.

One day before challenge: the age of phage

This study was sort of an over-time test – ideally the first of a few, where we’d get phages before (unless we were in the control group), during, and after the “challenge” (the shigella) to see if they had any effect at all – if it did, later studies could determine if you could just drink the phage after getting sick, or if it would work best as a prophylactic, or etc. We drank a chalky buffer solution to neutralize stomach acid and give the bacteriophages (and later, the bacteria) a better chance at making it to the intestine.

What do the solutions taste like? Basically all salty fluid with slight mineral nuance, from the buffer. Phages are known to be pretty tasteless so I didn’t expect anything else.

Bacteriophage therapy: sending a cat after mice

A bacteriophage is a virus that infects bacteria. They were discovered shortly after bacteria themselves were really pinned down – microscopes were finally powerful enough to make out bacteria, and visionaries like Robert Koch and Louis Pasteur were pinpointing that these little nothing-pinpricks were in fact the source of diseases. (For more on the discovery of the microbial world, see “Through the Looking Glass and what Zheludev Et Al. (2024) Found There”, my recent piece in Asterisk Magazine.)

In 1917, Félix d’Hérelle found an agent that killed cholera bacteria, which passed through a fine filter, and which could reproduce – a living agent that killed bacteria, but that was itself smaller than a bacteria.

d’Hérelle realized right away this substance which killed bacteria, and which people had apparently been drinking, had potential as medicine. He bred pathogenic bacteria in vats and added solutions, and waited until the cloudy brother of bacteria turned clear – then offered this liquid to sick patients. Many of them, sure enough, recovered. I was (unless I was in the control group) walking in historical footsteps. Dysentery was the first human disease ever treated with phage medicine.

Sending a phage after bacteria is like sending a cat after mice. Phages are small, targeted, well-adapted hunters of specific bacteria. There is no way for them to infect a human cell like a human virus would – they are completely specialized. Phages are already in the body, along with their bacterial hosts – so you’re not introducing a radically new agent – and the immune system tends to play well with them.

Phage are used widely in some parts of the world – the Republic of Georgia and Poland both sell phage over-the-counter, for use in say intestinal conditions or wounds, and have clinics for personalized treatment. In the US, phage therapy is an extremely rare specialty, sometimes even falling under the umbrella of naturopathy. (A phage being a natural bioactive product.)

Why would you use antibiotics instead of phages, or vice versa?

PhagesAntibiotics
Targeted – a phage attacks one species or one strain of bacteria
Easy to find usable new ones
More finnicky (e.g. less stable)
Predator-prey pharmacokinetics

Mostly spread where the bacteria are
Very few side effects
Broad-spectrum

Hard to find usable new ones
Shelf stable
Regular blood-elimination-curve pharmacokinetics
Systemic; enter the bloodstream
Sometimes-serious side effects

What if the bacteria become resistant to the phages too?

Well, that can happen easily – probably even easier than with antibiotics. Cells have been duking it out with viruses since the beginning of life. (Did you know CRISPR-Cas9, now used for gene editing, evolved in nature as a way for bacteria to recognize and cut up phage DNA?)

But the difference is that whereas new antibiotics are very hard to find, there is a nigh-inexhaustible evolutionary font of phages constantly pulling ahead in the arms race. So in short: once a bacteria becomes resistant to your special phage, just find a new phage.

Do they work?

To my knowledge, there aren’t any really gold-standard reviews comparing phages head-on to antibiotics. They are fiddlier than antibiotics, with a specialized body of knowledge for treatment – less stable, have to be introduced to the site directly, much more care in choosing an appropriate treatment.

One small study found a phage treatment comparably effective to antibiotics for Salmonella typhimirium in 36 lab mice.1 Another meta-study compared modern antibiotic studies to 17 studies from the last time human phage research was in vogue in the US, the 1920s-40s, and found that phages were effective treatments – but 4 modern clinical trials suggested phages were not effective.2 A more recent study of personalized phage therapy showed promising results in infections considered “difficult-to-treat”.3 They seem to work best when used with antibiotics.

I’m not doing a full lit review right now. I bet that phage therapy still has promise – more careful formulations and just more research will help. That’s before challenges of commercial rollout, including things like handling FDA approval for a product that must be reformulated regularly.

The elephant in the room is antibiotic resistance – antibiotics usually work extremely well, but increasingly, bacteria can survive them. Antibiotic resistance is, unlike other diseases you might think of that are exacerbated by over-medication, not a condition of privileged countries – lots of Shigella bacteria in developing countries are increasingly antibiotic-resistant.

Even if phages don’t work as well as the magic silver bullet that is antibiotics, they might work well enough to be worth incorporating into our medical toolbox as part of AMR management. And that means developing them now.

The other challenge is of course regulatory – I’m excited that Intralytix, who made the experimental product I did-or-didn’t take, is throwing their hat into the space of human phage medicine, and to see how they handle this.

Day 1 of challenge

On the third day in the ward after a day of baseline and a day of phage (unless we were in the control group), we took another dose of phage (unless we were in the control group), waited a couple of hours, and then drank a glass of shigella. This tasted like baking soda and salt with no particular nuance, nor would I expect nuance; the dose was some 1300 organisms – as in 1300 individual cells of bacteria, count ‘em. A preposterously scant microbial innoculum, even for devoted parasites it often takes on the order of millions of organisms to lodge an infection – but shigella is remarkably tenacious. It would only have taken 10-200. This was overkill – a dose that WILL make you sick, unless you’re protected. All the participants drank.

The waiting game

Shigella has a 24-72 hour incubation period, maybe 12-96 hours on the far ends.

Perhaps owing to quirks of my own psyche, whose origins I’m sure we don’t need to explore here, I find it reassuring to have reference experiences to conveniently benchmark the rest of my life by. If you go skiing, you can ask yourself later, “is this more or less exhilarating than skiing?” If you fall in love once, you can compare future loves to that earlier experience.

A good standard reference point for “shared, resigned dread” is the 72 or so hours in a clinical trial ward after everyone has ingested shigella bacteria along with maybe-a-treatment.

The vibes were ominous. Jovially nervous. Unprecedented gastrointestinal distress may or may not have been coming for me, but if it is, it would be arriving in (on average) 48 hours.

The floor was pretty quiet. The hours ticked by.

Infinite Jest is, by the way, a great book. David Foster Wallace knew how to write a goddamn sentence on purpose.

Let’s learn about Shigella pathogenesis

While I waited, I decided to read up. Shigella bacteria invades the body via the digestive canal, and infects the intestines – both small and large. It releases a toxin that facilitates its infection of other parts of the intestine and its eventual replication. It’s an intracellular pathogen – some bacteria, like all viruses, actually enter the host’s cell and replicate inside there.

Shigella actually prefers to invade the outside (or should I say the inside?) of intestinal cells. But the body is a locked-down system with its own guard force, the immune system, keeping the dirty external environment separate from the sterile inside environment. Shigella in the digestive tract really wants to poke through that line of intestinal cells and get at them from the other side.

How does Shigella get to the outside of the intestinal cell layer?

Wikipedia explains:

Once inside of the colon, S. flexneri can penetrate the epithelium in three ways:
1) The bacterium can alter the tight junctions between the epithelial cells, allowing it to cross into the sub-mucosa.
2) It can penetrate the highly endocytic M cells that are dispersed in the epithelial layer and cross into the sub-mucosa.
3) After reaching the sub-mucosa, the bacteria can be phagocytosed by macrophages and induce apoptosis, cell death. This releases cytokines that recruit polymorphonuclear cells (PMN) to the sub-mucosa. S. flexneri still in the lumen of the colon traverse the epithelial lining as the PMNs cross into the infected area. The influx of PMN cells across the epithelial layer in response to Shigella disrupts the integrity of the epithelium allowing lumenal bacteria to cross into the sub-mucosa in an M-cell independent mechanism.

This is really funny. Okay, imagine there’s a blockade of tightly parked police cars facing you and you and your buddies need to go get to their trunks so you can hide in them. Here are 3 ways to do this:

  1. Push the police cars to the side so you can walk between them
  2. Look for the police cars with the biggest doors, so that you can squeeze through the car and leave through their trunk (or I guess probably just stay in the trunk at that point)
  3. Get yourself and your buddies arrested, then when they send backup police vans to push through the police to arrest all of you, run through the cracks in the blockade that those vans open up. Then go to the trunks of the original cop cars.

And then once you’re inside the car, you can open the doors between the cop cars (they’re sliding doors) and then travel laterally between the cop cars. I love cells.


As a fun side note, Shigella – including the strain I was developing an intimate relationship with, Shigella flexneri – is, taxonomically speaking, a kind of Escherichia coli. Now you may notice from the scientific nomenclature that this is not how this is supposed to work.

When genotyping was developed and applied to some familiar standby kinds of bacteria that microbiology-as-science figured it understood pretty well, researchers learned two surprising new things:

  • E. coli is not a coherent species. Different strains of E. coli – known to have slightly different properties, but thought to be all slight variations on the same basic species – turned out to have only 20% of their genes in common. (Humans and our closest relatives, chimpanzees, have almost all of our genes in common* and still aren’t considered as the same genus.)
  • Shigella is in that umbrella of shared genes – a secret family member known as a taxon in disguise. It’s more similar to many E. colis than some E. colis.

For most species, the procedure at this point would be to throw in the towel and reclassify – Escherichia coli spp. shigella, perhaps. But in this case, shigatoxin-producing Shigella and other pathogenic Escherichia coli have different enough clinical presentations that the distinction is still medically valuable, so accurate nomenclature has bowed its head to practicality. Cool! (Compare and contrast with trees.)

*Wait, don’t people talk about 99% or something? That number is actually about sequence similarity and not related genes – if we have 96% sequence similarity, meaning the exact same genetic code, probably even more of that genome is still in related genes. Genes can code for clearly related proteins/sequences and still not be identical, like they came from a common ancestor and haven’t diverged much but have picked up a few changes along the way. Different E. coli have 80% completely different genes – a human has maaaybe 50 genes that a chimp doesn’t? I didn’t try very hard to find the actual similar metric between them. It’s what I was telling you about numbers. You gotta watch out.

Let’s really learn about Shigella pathogenesis

Some 24 hours in, the first people started going down. Via word of mouth I heard the phrase “Exorcist-style projectile vomiting” used to describe someone in the next room over, a description whose accuracy I fortunately cannot verify. Most people were in their rooms all day anyhow, but the crowd in the kitchen at mealtimes or showing up for morning dosing got thinner.

I really held out. Going to bed at end of the second night, I felt okay, but couldn’t sleep well – nerves, I thought, or the faint distorted unpleasant bodily noises from other parts of the ward. I maybe managed a couple hours of sleep by the wee hours.

48 hours in, I woke up for vitals and dosing at 6 AM and started feeling really faint on the short walk to the next room. I stumbled over to the toilet. Off to the races!

I should be clear in this section that I was in as close to zero long-term danger as you can get with dysentery, which is damn close – this was in a controlled setting with doctors and nurses, monitoring my condition regularly, with a known pathogen with a known cure. In this case, we weren’t expected to languish in indefinite misery – they wanted to see if we got sick and then how sick we got, yes, but only up to a point, at which point they would “call it” – administer regular antibiotics and end our experimental treatment.

All I had to do was let the time pass.

The next few hours were very bad. Surprisingly, the gastrointestinal symptoms were not much of a problem for me – I had them, but it wasn’t much worse than those of regular food poisoning. I didn’t throw up. I just wanted to go back to sleep.

But sleep wasn’t coming.

First was the plague of chills. The institutional cotton blankets did nothing; four of them also did nothing, as if there was no heat to hold in. Freezing, tooth-clattering cold.

Within an hour came the plague of joint pain. It sank in rather quickly and was all in the lower extremities – hips, legs. Any more than one blanket became too heavy to bear having on them, so off they go, freezing cold but they weren’t palpably doing anything anyway. Right? I remembered reading people with chronic pain reporting that sometimes laying down was worse than other positions, and sure enough sitting up was – somehow – mildly better. I situated the adjustable bedside table so that I could slump onto it and maybe even sleep like that, but sleep remained out of reach.

Time wasn’t shitting so much as dragging, by the bones, over rough pavement, every second another six inches, grating, relentless, second after second after second. Time is space in which you are moved forward one way or another. Pain is an active process. 

Around three hours later, the doctor came in and judged that I was done – they were calling it – symptomatically I had reached the Clinical Endpoint and would be treated. I was handed tylenol and antibiotics. 

I’d always thought of tylenol as sort of a second-rate painkiller, probably worth trying if you couldn’t find ibuprofen, but damn if that tylenol didn’t work pretty quickly. As soon as I could I went to sleep for like four hours – which, as usual, if you are in a position of needing four hours of sleep, makes a lot of things better and more manageable once you can swing it.

Out the other side

The antibiotics worked really quickly. Within hours, the fever had vanished and the aches had dwindled to twinges. Within a couple days, even the gastrointestinal situation was back to normal. Other people were harder hit, other people were just starting to get sick – staying vanished in their rooms even after I stuck my head into the kitchen and rec rooms like the first hopeful groundhog of spring – and many had been fine the whole time.

The thing that kills people in dysentery is dehydration and complications thereof. So part of the recovery is collecting and measuring how many fluids were emitted, and then re-administering oral rehydration fluid – a salty liquid served ice-cold – in precise ratios to replace the bodily fluids lost. A human is a series of tubes with attached nervous system and fortunately I was in the company of master plumbers. Once the diarrhea had stopped, I was also able to stop guzzling big plastic cups of what I liked to imagine tasted like arctic seawater. Progress!

Breakfast - french toast in a plastic container and a cup of coffee - illuminated in golden morning light, at a table with a nice view out into the city.
Great view from the rec room.

People who recovered and who never got sick started hanging out in the rec room more, chatting and playing pool. I spent my birthday calling my parents and talking to internet friends. One streamed himself playing a fish-themed video game in my honor. The Baltimoreans inexplicably set off fireworks many nights – maybe the proximity to July 4th? – and this was one of them. Not roadside-stand-ground fireworks, but big aerial fireworks. A fellow subject found ice cream bars in the kitchen freezer and kindly brought me one as a present. Fireworks aside, it was a quiet day.

Apologies for the deception, reader. Technically speaking, the word “dysentery” usually refers to a syndrome, like “psychosis” or “high blood pressure”, which can have multiple causes but which is defined by specific symptoms. The specific symptom of dysentery is bloody diarrhea. I personally did not get this particular symptom – I became sick with shigellosis but, according to a common criteria, did not get dysentery. I’m sorry for clickbaiting you. In my defense, I would have taken it over the joint pain.

Aftermath

Twice a day after antibiotics, we gave the nurses a stool sample – these were sampled and cultured at some lab to determine if shigella was still in there. Two negative samples in a row meant that we were free to go.

9 days after coming in, I was cleared for release. I collected my scissors, and, free of dysentery, was released onto the streets of Baltimore. A year older on paper. Healthy, wrung out, ready for time to keep doing what it does. Hopefully, mostly on kinder terms.

View of Baltimore out a train window.
The train ride home. I see that 75% of these photos have coffee in them. What can I say? I’m from Seattle.

I think that despite my relatively mild case, that I was in the control group. But the reason I think that was because in the whole trial, everyone drank the shigella, and it sure seemed like about half of them didn’t get sick at all.

Pretty goddamn cool, if you ask me.

If you want to have study rigor performed on your body, you can look for clinical trials at clinicaltrials.gov. 1DaySooner advocates for human challenge trials; they have a list of challenge trials that are actively recruiting and you can also sign up for email alerts. Many of them pay money. Consider checking it out.

  1. R. a. N. Acebes et al., “Comparing the Efficacy of Bacteriophages and Antibiotics in Treating Salmonella Enteric Serovar Typhimurium on Streptomycin-Pretreated Mice,” Philippine Journal of Science (Philippines) 150, no. 6a (2021), https://agris.fao.org/search/en/providers/122430/records/6474afaca3fd11e430380e4f. ↩︎
  2. Luigi Marongiu et al., “Reassessment of Historical Clinical Trials Supports the Effectiveness of Phage Therapy,” Clinical Microbiology Reviews 35, no. 4 (September 7, 2022): e00062, https://doi.org/10.1128/cmr.00062-22. ↩︎
  3. Jean-Paul Pirnay et al., “Personalized Bacteriophage Therapy Outcomes for 100 Consecutive Cases: A Multicentre, Multinational, Retrospective Observational Study,” Nature Microbiology 9, no. 6 (June 2024): 1434–53, https://doi.org/10.1038/s41564-024-01705-x. ↩︎

Thank you Grace Neptune, Kelardry, and YumAntimatter for reviewing a draft of this post.

I have a Patreon! Consider supporting my writing by throwing me a few bucks. I’d really appreciate it. I won’t be getting dysentery again (…on purpose) but I have some other good stuff in the works.

Posted on [Eukaryote Writes BlogSubstackLesswrongEA Forum]

Through the Looking Glass, and What Zheludev et al. (2024) Found There. By Georgia Ray. Every time microbiologists develop a new way of looking, they find that there's more to see than they expected.

Eukaryote writes for Asterisk Magazine

See my piece on the history of microbiology and the vast, invisible worlds that come into focus every time we figure out how to look closer:

Through the Looking Glass, and What Zheludev et al. (2024) Found There at Asterisk Magazine


I’ve written for Asterisk before: What I won’t eat, on arriving at an equilibrium on the “it’s bad when animals suffer” vs. “but animal products taste good” challenge.

Recommendation: reports on the search for missing hiker Bill Ewasko

Content warning: About an IRL death.

Today’s post isn’t so much an essay as a recommendation for two bodies of work on the same topic: Tom Mahood’s blog posts and Adam “KarmaFrog1” Marsland’s videos on the 2010 disappearance of Bill Ewasko, who went for a day hike in Joshua Tree National Park and dropped out of contact.

2010 – Bill Ewasko goes missing

2022 – Ewasko’s body found

And then if you’re really interested, there’s a little more info that Adam discusses from the coroner’s report:

(I won’t be fully recounting every aspect of the story. But I’ll give you the pitch and go into some aspects I found interesting. Literally everything interesting here is just recounting their work, go check em out.)

Most ways people die in the wilderness are tragic, accidental, and kind of similar. A person in a remote area gets injured or lost, becomes the other one too, and dies of exposure, a clumsy accident, etc. Most people who die in the wilderness have done something stupid to wind up there. Fewer people die who have NOT done anything glaringly stupid, but it still happens, the same way. Ewasko’s case appears to have been one of these. He was a fit 66-year-old who went for a day hike and never made it back. His story is not particularly unprecedented.

This is also not a triumphant story. Bill Ewasko is dead. Most of these searches were made and reports written months and years after his disappearance. We now know he was alive when Search and Rescue started, but by months out, nobody involved expected to find him alive.

Ewasko was not found alive. In 2022, other hikers finally stumbled onto his remains in a remote area in Joshua Tree National Park; this was, largely, expected to happen eventually.

I recommend these particular stories, when we already know the ending, because they’re stunningly in-depth and well-written fact-driven investigations from two smart technical experts trying to get to the bottom of a very difficult problem. Because of the way things shook out, we get to see this investigation and changes in theories at multiple points: Tom Mahood has been trying to locate Ewasko for years and written various reports after search and search, finding and receiving new evidence, changing his mind, as has Adam, and then we get the main missing piece: finding the body. Adam visits the site and tries to put the pieces together after that.

Mahood and Adam are trying to do something very difficult in a very level-headed fashion. It is tragic but also a case study in inquiry and approaching a question rationally.

(They’re not, like, Rationalist rationalists. One of Mahood’s logs makes note of visiting a couple of coordinates suggested by remote viewers, AKA psychics. But the human mind is vast and full of nuance, and so was the search area, and on literally every other count, I’d love to see you do better.)

Unknowns and the missing persons case

Like I said, nothing mind-boggling happened to Ewasko. But to be clear, by wilderness Search and Rescue standards, Ewasko’s case is interesting for a couple reasons:

First, Ewasko was not expected to be found very far away. He was a 65-year-old on a day hike. But despite an early and continuous search, the body was not found for over a decade.

Second, two days after he failed to make a home-safe call to his partner and was reported missing, a cell tower reported one ping from his cell phone. It wasn’t enough to triangulate his location, but the ping suggested that the phone was on in a radius of approximately 10.6 miles around a specific cell tower. The nearest point of that radius was, however, miles in the opposite direction from the nearest likely trail destination to Ewasko’s car – from where Ewasko ought to be.

A detailed map of Joshua Tree national park. Main points of interest are a few scattered areas all over the park that we know Ewasko was interested in visiting. In the middle of it is a parking lot, Juniper Flats, where Ewasko's car was found. About three miles to the northeast is Quail Mountain, another destination but one that's reachable by the trailhead where the car is - so maybe where he would have gone. But starting a couple miles northeast of THAT is the lower edge of a broad purple ring - this ring represents where a cell tower was pinged 2 days after last contact with Ewasko, suggesting that his phone was at a point within this arc.
The base for a decade of searching. Approximate overlays, info from Mahood and Adam’s work, over Joshua Tree National Park visitor map. 

If you’ve spent much time in wilderness areas in the US, you know that cell coverage is findable but spotty. You’ll often get reception on hills but not in valleys, or suchlike. There’s a margin for error on cell tower pings that depends on location. Also, in this case, Verizon (Ewasko’s carrier) had decent coverage in the area – so it’s kind of surprising, and possibly constrains his route, that his cell phone only would have pinged once.

All of this is very Bayesian: Ewasko’s cellphone was probably turned off for parts of his movement to save battery (especially before he realized he was in danger), maybe there was data that the cell carrier missed, etc, etc. But maybe it suggests certain directions of travel over others. And of course, to have that one signal that did go out, he has to have gotten to somewhere within that radius – again, probably.

How do you look for someone in the wilderness?

Search and rescue – especially if you are looking for something that is no longer actively trying to be found, like a corpse – is very, very arduous. In some ways, Joshua Tree National Park is a pretty convenient location to do search and rescue: there aren’t a lot of trees, the terrain is not insanely steep, you don’t have to deal with river or stream crossings, clues will not be swept away by rain or snow.

But it’s not that simple. The terrain in the area looks like this:

A desert landscape of rolling nested hills with shrubs small and large and a few spiky Joshua Trees dotted over it.
I haven’t been to Joshua Tree myself, but going from Adam’s videos, this is representative of the kind of terrain. || Photo in Joshua Tree National Park by Shane Burkhardt, under a CC BY-NC 2.0 license.

There are rocks, low obstacles, different kinds of terrain, hills and lines of sight, and enough shrubbery to hide a body.

A lot of the terrain looks very similar to other parts of the terrain. Also dotted about are washes made of long stretches of smooth sand, so the landscape is littered with features that look exactly like trails.

Also, environmentally, it’s hot and dry as hell, like “landscape will passively kill you”, and there are rattlesnakes and mountain lions.

When a search and rescue effort starts, they start by outlining the kind of area in which they think the person might plausibly be in. Natural features like cliffs can constrain the trails, as can things like roads, on the grounds that if a lost person found a road, they’d wait by the road. 

You also consider how long it’s been and how much water they have. Bill Ewasko was thought to have three bottles of water on him – under harsh and dry circumstances, that water becomes a leash, you can only go so far with what you have. A person on foot in the desert is limited in both time and distance by the amount of water they carry; once that water runs out, their body will drop in the area those parameters conscribe.

Starting from the closest, most likely places and moving out, searchers first hit up the trails and other clear points of interest. But once they leave the trail? Well, when they can, maybe they go out in an area-covering pattern, like this:

A topographical map overlaid with a GPS track. The GPS path evenly and methodically covers a small area.
Map by Tom Mahood of one of his search expeditions, posted here. The single-dashed line is the cellphone ping radius.

But in practice, that’s not always tenable. Maybe you can really plainly see from one part to another and visually verify there’s nothing there. Maybe this wouldn’t get you enough coverage, if there are obstacles in the way. There are mountains and cliff faces and rocky slopes to contend with. 

Also, it’s pretty hard to cover “all the trails”, since they connect to each other, and someone is really more likely to be near a trail than far away from a trail. Or you might have an idea about how they would have traveled – so do you do more covering-terrain searching, or do you check farther-out trails? In this process, searchers end up making a lot of judgment calls about what to prioritize, way more than you might expect.

You end up taking snaky routes like this:

Another topographical map overlaid with a GPS track. This one has a few overlaid with each other, but the active expedition is a snaking winding route around steep mountains, it is NOT visibly even and methodical.
Map by Tom Mahood, posted here. This is a zoom-in of a pretty small area. Blue was the ground covered in this single expedition, green and red are older search trails, and the long dashed line is the cellphone ping radius.

The initial, official Search and Rescue was called off after about a week, so the efforts Mahood records – most of which he is doing himself, or with some buddies – constitute basically every search that happened. He posts GPS maps too, of that day’s travels overlaid on past travels. You see him work outward, covering hundreds of miles, filling in the blank spots on the map.

Mahood is really good at both being methodical and explaining his reasoning for each expedition he makes, and where he thinks to look. It’s an absolutely fascinating read.

43 expeditions in, in December 2012, Mahood writes this:

A screenshot of a comments and map. The map is a zoomed in area of a BUNCH of GPS trails over time, filling in space all over about 6 square miles on the map where Ewasko might be, much of it overlapping or close to the cellphone ping radius. Up in a hill near the north corner, and just off the edge of where the latest trail goes, there is a purple dot. The text reads: "Comments:
At one point in my travels I reached the northerly summit of the free standing hill northerly of Samuelson’s Rocks. Looking southwest I could see the rugged slopes of Quail Mountain. Looking due west, I could see right into the month of Smith Water Canyon. Toward the north, Quail Wash flowed down toward the homes just beyond the limits of Joshua Tree National Park. I was looking at the entire playing field. I sat for a while, scanned the area with binoculars and thought about things. Knowing where we had been, where the original searchers had been and what we now know the cell phone ping means, I started to develop some new ideas for the next phase in searching. And one way or another, I suspect it will be the final phase. We’ll either find Bill or he’s not findable."
In this image, one map square is ~one mile.

The purple dot is my addition. This is where Ewasko’s body was found in 2022. Mahood wrote this about the same trip where (as far as I can tell) he came the closest any searcher ever got to finding Ewasko. Despite saying it was the end game, Mahood and associates mounted about 50 more trips. Hindsight is heartbreaking.

Making hindsight useful

Hindsight haunts this story in 2024. It’s hard to learn about something like this and not ask “what could have stopped this from happening?”

I found myself thinking, sort of automatically, “no, Ewasko, turn around here, if you turn around here you can still salvage this,” like I was planning some kind of cross-temporal divine intervention. That line of thinking is, clearly, not especially useful.

Maybe the helpful version of this question, or one of them, is: If I were Ewasko, knowing what Ewasko knew, what kind of heuristics should I have used that would have changed the outcome?

The answer is obviously limited by the fact that we don’t know what Ewasko did. There are some specifics, like that he didn’t tell his contacts very specific hiking plans. But he was also planning on a day hike at an established trailhead in a national park an hour outside of Palm Springs. Once he was up the trail, you’ll have to watch Adam’s video and draw your own conclusions (if Adam is even right.)

Mahood writes: “People seldom act randomly, they do what makes sense to them at the time at the specific location they are at.” 

And Adam says: “Most man-made disasters don’t spring from one bad decision but from a series of small, understandable mistakes that build on one another.”

Another question is: If I were the searchers, knowing what the searchers know, what could I have done differently that would have found the body faster?

Knowing how far away the body was found and the kind of terrain covered, I’m still out on this one.

How deep the search got

Moving parts include:

  • Concrete details about Ewasko (Ewasko’s level of fitness, his supplies, down to the particular maps he had, what his activities were earlier in the day)
  • Ewasko’s broader mindset (where he wanted to go at the outset, which tools he used to navigate trails, how much HE knew about the area)
  • Ewasko’s moment-to-moment experience (if he were at a particular location and wanted to hurry home, which route would he take? What if he were tired and low on water and recognized he was in an emergency? What plans might he make?) (This ties into the field of Search and Rescue psychology – people disoriented in the wilderness sometimes make predictable decisions.)
  • Physical terrain (which trails exist and where? How hard is it to get from places to place? What obstacles are there)
  • Weather (how much moonlight was there? How hard was travelling by night? How bad was the daytime heat?)
  • Electromagnetic terrain (where in the park has cell service?)
  • Electromagnetic interpretation (How reliable is one reported cell phone ping? If it is inaccurate, in which ways might it be inaccurate?)
  • Other people’s reports (the very early search was delayed because a ranger apparently just repeatedly didn’t see or failed to notice Ewasko’s car at a trailhead, and there were conflicting reports about which way it was parked. According to Adam and I think Mahood, it now seems now like the car was probably there the entire time it should have been, and it was probably just missed due to… regular human error. But if this is one of the few pieces of evidence you have, and it looks odd – of course it seems very significant.)
  • The search evolving over time (where has been looked in what ways before? And especially as the years pass on – some parts of the terrain are now extremely well-searched, not to mention are regularly used by regular hikers. What are the changes one of these searches missed somewhere, vs. that Ewasko is in a completely new part of the territory?)

I imagine that it would be really hard to choose to carry on with something like this. In this investigation, there was really no new concrete evidence between 2010 and 2022. As Mahood goes on, in each investigation, he adds the tracks to his map. Territory fills in – big swathes of trails, each of them. New models emerge, but by and large the only changing detail is just that you’ve checked some places now, and he’s somewhere you haven’t checked. Probably.

A hostile information environment

Another detail that just makes the work more impressive: Mahood is doing all these investigations mostly on his own, without help and with (as he sees it, although it’s my phrasing) dismissal and limited help from Joshua Tree National Park officials. The reason Mahood posted all of this on the internet was, as he describes it, throwing up his hands and trying to crowd-source it, asking for ideas.

Then after that – The internet has a lot of interested helpful people – I first ran into Mahood’s blog months ago via r/RBI (“Reddit Bureau of Investigation”) or /r/UnsolvedMysteries or one of those years ago. I love OSINT, I think Mahood doing what he did was very cool. But also on those sites and also in other places there are also a lot of out-there wackos. (I know, wackos on the internet. Imagine.) In fact there’s a whole conspiracy theory community called Missing 411 about unexplained disappearances in national parks, which attributes them vaguely to sinister and/or supernatural sources. I think that’s all probably full of shit, though I haven’t tried to analyze it.

Anyway, this case attracted a lot of attention among those types. Like: What if Bill Ewasko didn’t want to be found? What if someone wanted to kill him? What if the cellphone ping was left by as an intentional red herring? You run into words like “staged” or “enforced disappearance” or “something spooky” in this line of thought, so say nothing of run-of-the-mill suicide.

Look, we live in a world where people get kidnapped or killed or go to remote places to kill themselves sometimes, the probability is not zero. Also – and I apologize if this sounds patronizing to searchers, I mean it sympathetically – extended fruitless efforts like this seem like they could get maddening, that alternative explanations that all your assumptions are wrong would start looking really promising. Like you’re weaving this whole dubious story about how Ewasko might have gone down the one canyon without cell reception, climbing up and down hills in baking heat while out of water and injured – or there’s this other theory, waving its hands in the corner, going yeah, OR he’s just not in the park at all, dummy! 

Its apparent simplicity is seductive.

Mahood apparently never put much stock in these sort of alternate models of the situation; Adam thought it was seriously likely for a while. I think it’s fair to say that “Ewasko died hiking in the park, in a regular kind of way” was always the strongest theory, but it’s the easiest fucking thing in the world for me to say that in retrospect, right? I wasn’t out there looking.

Maps and territories

Adam presents a theory about Ewasko’s final course of travel. It’s a solid and kind of stunning explanation that relies on deep familiarity with many of the aforementioned moving factors of the situation, and I do want you to watch the video, so go watch his video. (Adam says Mahood disagrees with him about some of the specifics – Mahood at present hasn’t written more after the body was found, but he might at some point, so keep an eye out.)

I’ll just go talk a little about one aspect of the explanation: Adam suspects Ewasko got initially lost because of a discrepancy between the maps at the time and the on-the-ground trail situation. See, multiple trails run out of the trailhead Ewasko parked at and through the area he was lost in, including official park-made trails and older abandoned Jeep trails. 

Satellite view of parking lot off a road in the wilderness. Out of the parking lot, from the air, we see one faint curving foot trail, and on the other side of the lot, one very clear wide jeep trail.
Example of two trails coming out of the Juniper Flats trailhead where Ewasko’s car was parked. Adam thinks Ewasko could have taken the jeep trail and not even noticed the foot trail. | Adapted from Google Satellite footage from 2024. I made this image but this exact point was first made by Adam in his video.

Adam believes that partly as a result of the 1994 Desert Protection Act, Joshua Tree National Park was trying to promote the use of their own trails, as an ecosystem conservation method. Ewasko believes that Joshua Tree issued guidance to mapmakers to not mark (or de-prioritize marking) trails like the old Jeep roads, and to prioritize marking their official trails, some of which were faint and not well-indicated with signage.

Adam thinks Ewasko left the parking lot on the Jeep road – which, to be fair, runs mostly parallel to the official trail, and rejoins to it later. But he thinks that Ewasko, when returning, realized there was another parallel trail to the south and wanted to take a different route back, causing him to look for an intersection. However, Ewasko was already on the southern trail, and the unlabeled intersection he saw was to another trail that took him deeper into the wilderness – beginning the terrible spiral.

Think of this in terms of Type I and Type II errors. It’s obvious why putting a non-existent trail on a map could be dangerous: you wouldn’t want someone going to a place where they think there is a trail, because they could get lost trying to find it. It’s less obvious why not marking a trail that does exist could be dangerous, but it may well have been in this case, because it will lead people to make other navigational errors.

Endings

The search efforts did not, per se, “work”. Ewasko’s body was not found because of the search effort, but by backpackers who went off-trail to get a better view of the sunset. His body was on a hill, about seven miles northeast of his car, very close to the cellphone ping radius. He was a mile from a road.

In Adam’s final video, on Ewasko’s coroner’s report, Adam explaining that he doesn’t think he will ever learn anything else about Ewasko’s case. Like, that he could be wrong about what he thinks happened or someone may develop a better understanding of the facts, but there will be no new facts. Or at least, he doubts there will be. There’s just nothing left likely to be found.

There are worse endings, but “we have answered some of our questions but not all of them and I think we’ve learned all we are ever going to learn” has to be one of the saddest.

Like I said, I think the searchers made an incredible, thoughtful effort. Sometimes, you have a very hard problem and you can’t solve it. And you try very hard to figure out where you’re wrong and how and what’s going on and what you do is not good enough.

These reports remind me of the wealth of material available on airplane crashes, the root cause analyses done after the fact. Mostly, when people die in maybe-stupid and sad accidents, their deaths do not get detailed investigations, they do not get incident reviews, they do not get root cause analyses.

But it’s nice that sometimes they do.

If you go out into the wilderness, bring plenty of water. Maybe bring a friend. Carry a GPS unit or even a PLB if you might go into risky territory. Carry the 10 essentials. If you get lost, think really carefully before going even deeper into the wilderness and making yourself harder to find. And tell someone where you’re going.


Crossposted to: eukaryotewritesblog.com | Substack | LessWrong